Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi645g00003 ATGGCACCCAGTTTTGATTGTGTTTCAAGCCTTCTCTGTGCTGAAGACAACAGCATTTTTGATGAAAACGATTTTGGGGGTTCGATGGAGATGTTGGAGGAAACATGGAATCCTAGATATAATGGAAACTATAATCAAAGACAACAGCACTATGGTGACCCAAATGGGTGGTTGCCATTGCAGAGTGATGAATGTTTGGCTCTTATGGTGGAAAAGGAATGTCACCACTTGCCTGGTGGTGATTATGTGAATAGGCTGAGAAGTGGGGATTTGGATTTTGGGGCTAGAAATGAGGCCATTGATTGGATTGAAAAGGTCAGAGAGCATTTTGGTTTTGGACCTCTCAGTACATATCTATCCATAAACTACTTGGACCGATTCCTTTCTGCATATGAATCACCAAAGCAAAGACCTTGGACAATGCAATTGCTGGCTGTGGCATGCTTATCTCTTGCAGCCAAAGTAGATGAGACTGAAGTTCCTCTGTCTCTTGATTTGCAGGTGGGTGAATCTAAGTTTTTATTTGAAGCTAAAACAATACAAAAAATGGAGCTTCTTGTACTGAGCACATTGAAATGGAGAATGCAAGCAATTACTCCATTTTCCTTCATTGACTATTTCCTTTTGAAGATCAATGATGATCAAAGTGCAATAGGGGCTTCAATTTTTCAATCTGTCCAACTTATACTGAGTACTGTAAGAGGAATTGACTTCTTGGAGTTCAGACCATCAGAGATTGCAGCAGCAGTGGCAATATCTGTGGTGGGGGAAACCCAAACAGTTCTTACTGAGAAAGCAATTTCTGTTCTGATTCACCATGTAGAAAAGGAGAGAGTATTGAAGTGTGTTAAAATGATGAATGAGCTGTCATCAGGTAGTGGTTCTGCTAAGGATACTAGTGCTTCTGTTCCTCCTGTCCTTTGTGTGCCCCAAAGCCCAATAGGGGTGTTGGACACTGTGTGCTTAAGCTACAAAAGTGATGACACAAATGTTGGTTCATGTGCAAATTCTTCACTCAATAGTCCAGATGCTAAAAGGAGGAAGCTAAAATAA 1053 0.4093 MAPSFDCVSSLLCAEDNSIFDENDFGGSMEMLEETWNPRYNGNYNQRQQHYGDPNGWLPLQSDECLALMVEKECHHLPGGDYVNRLRSGDLDFGARNEAIDWIEKVREHFGFGPLSTYLSINYLDRFLSAYESPKQRPWTMQLLAVACLSLAAKVDETEVPLSLDLQVGESKFLFEAKTIQKMELLVLSTLKWRMQAITPFSFIDYFLLKINDDQSAIGASIFQSVQLILSTVRGIDFLEFRPSEIAAAVAISVVGETQTVLTEKAISVLIHHVEKERVLKCVKMMNELSSGSGSAKDTSASVPPVLCVPQSPIGVLDTVCLSYKSDDTNVGSCANSSLNSPDAKRRKLK 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi645g00003 350 SUPERFAMILY Cyclin-like 180 290 IPR036915 -
Sebi645g00003 350 SMART Cyclin_C_2 198 315 IPR004367 -
Sebi645g00003 350 Pfam Cyclin, C-terminal domain 198 297 IPR004367 -
Sebi645g00003 350 Gene3D - 68 284 - -
Sebi645g00003 350 PANTHER CYCLINS 63 288 IPR039361 -
Sebi645g00003 350 CDD CYCLIN_AtCycD-like_rpt1 95 193 - -
Sebi645g00003 350 FunFam D2/4-type cyclin 79 191 - -
Sebi645g00003 350 SMART cyclin_7 101 189 IPR013763 -
Sebi645g00003 350 Gene3D - 79 196 - -
Sebi645g00003 350 SUPERFAMILY Cyclin-like 57 195 IPR036915 -
Sebi645g00003 350 CDD CYCLIN_AtCycD-like_rpt2 198 286 - -
Sebi645g00003 350 FunFam D6-type cyclin 192 284 - -
Sebi645g00003 350 Pfam Cyclin, N-terminal domain 66 195 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi645g00003 Sebi-Chr645 176911 178944 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi645g00003 40 335 Core Cell Cycle Gene Families AT2G22490 48.220 2.22e-87 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi645g00003 K18810 - gmx:100803873 523.087