Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi641g00004 ATGTTAGATCTTAATCTCAATGTGAACTCGACCGATTCGACTCAGAACGGCGACTCGTCGGCGCTTTTGGAGAAGCTTCATGAAGGTTCCTGGAACCAAATGGCGGAGTCAGGGACCTCGAATTCCTCCGTCGTCAATGCGGACGGGTCTAGCAACGGCGCAGGGGACGAGGACTCGTGCTCCACGCGCGCCGACGACGTGTTCACCTTCAATTTCGATATCCTTAAGGTGAAAGGCGCAAACGACGTCGTGACGAAGGAGCTGTTCCCGGTGAGTGGAGGAGCTAAAGGAGTGGATGAAGGCGGGTCCGGGAATTGGCAGTGGCAGGCTACGTCGTCGTTTCCGCCGAGGAATAATGGCTCGGTGGATCTCTCGTTCGATCGCCAGGGTGGGAACAGCGAGATGAAGATGGTTCAGCCTCAGCAACAAGCGAAGAAGAGTAGAAGGGGACCAAGGTCTCGGAGCTCGCAATACAGAGGAGTCACCTTTTACAGAAGGACCGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACAGCCCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTATTAAGTTCAGGGGAGTTGACGCTGACATCAATTTCAATCTGAGTGATTATGAGGATGATCTTAAACAGATGAAGAATTTATCCAAGGAGGAATTCGTGCACATACTCCGTCGCCAAAGTAATGGTTTCTCGAGGGGGAGCTCAAAATACCGAGGAGTAACACTCCACAAATGTGGCCGTTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGGTTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAATGCAATGGAAGGGAAGCAGTGACTAACTTCGAGCCAAGTACATACGAAGGAGAGATGAAATCTGCAGCCATTAATGAAGGTGGCAGTCAAAATCTCGACCTCAATTTGGGCATAGCAACCCCAGGACCTGGTCCCAAAGAAAACTTGGGGCAACTTCAGTTCTCCTCTGTCCCTTACAACATGCACGCTGGAAGAAGTTCAAGGATGGAAACCAATGTTAATTCAGGAATTGATAATCCATCTTTGAAAAGGCGGGTTGTTACTGAAGAGCGTCCTTCTGTATGGAATGACATGTGTCCTAGTTTCTTTCCCAATGAGGAAAGAGCAGAGCGTTTCAGCATAGATCCTTCAGAAGGACTCCCCAATTGGGCGTGGCAAACACATGGCCAGGTCACTGCTACGCTAGTGCCACCGTTCTCTGCTGCAGCAGCATCATCAGGATTCTCAATATCAGCTAGCTTTCCACCAACTGCCATTTTTCCAACAAGATCTATGAGCTCAATTCCATAG 1395 0.4932 MLDLNLNVNSTDSTQNGDSSALLEKLHEGSWNQMAESGTSNSSVVNADGSSNGAGDEDSCSTRADDVFTFNFDILKVKGANDVVTKELFPVSGGAKGVDEGGSGNWQWQATSSFPPRNNGSVDLSFDRQGGNSEMKMVQPQQQAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLSDYEDDLKQMKNLSKEEFVHILRRQSNGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMKSAAINEGGSQNLDLNLGIATPGPGPKENLGQLQFSSVPYNMHAGRSSRMETNVNSGIDNPSLKRRVVTEERPSVWNDMCPSFFPNEERAERFSIDPSEGLPNWAWQTHGQVTATLVPPFSAAAASSGFSISASFPPTAIFPTRSMSSIP 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi641g00004 464 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 123 341 - -
Sebi641g00004 464 MobiDBLite consensus disorder prediction 34 58 - -
Sebi641g00004 464 Pfam AP2 domain 157 205 IPR001471 GO:0003700|GO:0006355
Sebi641g00004 464 Pfam AP2 domain 248 298 IPR001471 GO:0003700|GO:0006355
Sebi641g00004 464 MobiDBLite consensus disorder prediction 34 60 - -
Sebi641g00004 464 MobiDBLite consensus disorder prediction 104 146 - -
Sebi641g00004 464 SUPERFAMILY DNA-binding domain 248 307 IPR016177 GO:0003677
Sebi641g00004 464 ProSiteProfiles AP2/ERF domain profile. 157 213 IPR001471 GO:0003700|GO:0006355
Sebi641g00004 464 ProSiteProfiles AP2/ERF domain profile. 249 306 IPR001471 GO:0003700|GO:0006355
Sebi641g00004 464 PRINTS Ethylene responsive element binding protein signature 250 261 IPR001471 GO:0003700|GO:0006355
Sebi641g00004 464 PRINTS Ethylene responsive element binding protein signature 288 308 IPR001471 GO:0003700|GO:0006355
Sebi641g00004 464 FunFam AP2-like ethylene-responsive transcription factor 248 308 - -
Sebi641g00004 464 CDD AP2 157 215 IPR001471 GO:0003700|GO:0006355
Sebi641g00004 464 MobiDBLite consensus disorder prediction 95 158 - -
Sebi641g00004 464 CDD AP2 248 308 IPR001471 GO:0003700|GO:0006355
Sebi641g00004 464 SMART rav1_2 249 312 IPR001471 GO:0003700|GO:0006355
Sebi641g00004 464 SMART rav1_2 157 219 IPR001471 GO:0003700|GO:0006355
Sebi641g00004 464 Gene3D AP2/ERF domain 248 307 IPR036955 GO:0003700|GO:0006355
Sebi641g00004 464 Gene3D AP2/ERF domain 156 214 IPR036955 GO:0003700|GO:0006355
Sebi641g00004 464 SUPERFAMILY DNA-binding domain 156 214 IPR016177 GO:0003677
Sebi641g00004 464 FunFam AP2-like ethylene-responsive transcription factor 156 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi641g00004 Sebi-Chr641 38206 41573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi641g00004 1 453 AP2-EREBP Transcription Factor Family AT5G60120 45.473 6.14e-100 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Sebi641g00004 AP2 2.7e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi641g00004 K09284 - gmx:100788303 706.827