Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi640g00005 ATGTCTCACCAGGGCGAATCGTCGGACTCGAAATCGGGGAAGAAAGATTTCTCGACGGCGATTCTAGAGCGGAAAAAGTCGCCGAACCGATTAATCGTGGATGAGGCCGTCAACGACGACAACTCAGTGGTTTCCATGCACCCTGACACCATGGAAAAGCTCCAGCTTTTCCGGGGCGACACTATCCTCATCAAGGGCAAGAAGCGGAAGGATACGATTTGCATAGCTCTTGCTGATGAGACTTGTGAGGAGCCCAAGATTAGGATGAACAAAGTTGTGAGGTCAAATTTGAGGGTTCGTCTTGGAGATGTTGTGTCTGTGCACCAGTGCCCTGATGTCAAGTATGGGAAGCGCGTTCACATTCTGCCTATTGATGATACCATTGAAGGTGTCACTGGAAATCTCTTTGACGCTTACTTGAAACCTTATTTCCTGGAGTCTTATCGTCCAGTCAGGAAAGGAGATCTGTTTCTTGTCCGAGGAGGGATGAGAAGTGTAGAGTTCAAGGTCATTGAAACTGATCCTGGGGAATATTGTGTGGTTGCTCCAGACACTGAAATATTCTGTGAGGGGGAGCCTGTGAAAAGGGAGGATGAAGAAAGGCTTGATGAAGTTGGGTATGATGATGTGGGTGGCGTCAGGAAGCAAATGGCACAGATTCGTGAATTGGTAGAGCTTCCACTGAGGCATCCACAACTTTTTAAATCAATTGGTGTGAAACCACCCAAAGGAATTTTGCTGTATGGACCCCCAGGCTCTGGTAAGACATTAATAGCCAGAGCTGTTGCTAATGAAACAGGAGCGTTCTTCTTTTGTATTAATGGGCCAGAGATTATGTCCAAACTGGCTGGAGAGAGTGAAAGCAATCTCAGGAAAGCATTTGAAGAAGCTGAAAAAAATGCTCCCTCCATCATATTTATTGATGAGATTGATTCTATTGCACCCAAGCGAGAGAAGACACATGGTGAAGTTGAAAGGAGGATTGTTTCACAGCTTTTAACTCTTATGGATGGACTGAAATCTCGTGCTCATGTTATTGTTATTGGAGCTACAAATCGTCCAAATAGCATTGATCCAGCATTGAGAAGAGAGAATTTCAAAGATACTCATGGGTATGTTGGTGCCGACCTTGCTGCCCTTTGCACTGAAGCTGCCCTGCAATGTATTAGGGAGAAGATGGATGTCATTGATTTGGAAGATGAGACTATTGATGCTGAAATACTGAATTCTATGGCAGTTTCAAATGAGCATTTCCAGACTGCTCTAGGAACCAGCAACCCATCAGCTTTACGTGAAACTGTTGTTGAGGTGCCTAACGTCAGTTGGGAAGATATTGGAGGCCTTGAGAATGTCAAACGCGAGCTGCAAGAGACTGTTCAATATCCTGTGGAGCACCCAGAAAAATTTGAGAAGTTTGGTATGTCACCATCAAAAGGAGTCCTCTTCTACGGCCCTCCAGGATGTGGGAAAACTTTGTTGGCCAAAGCAATTGCTAATGAATGTCAAGCTAACTTCATCAGTGTGAAAGGCCCAGAGTTGCTTACTATGTGGTTTGGTGAAAGTGAAGCCAATGTTCGAGAAATTTTTGACAAGGCTAGACAATCAGCTCCATGTGTCCTCTTCTTTGATGAGCTCGACTCCATTGCCACTCAGAGAGGAAGTAGTGTTGGGGATGCTGGTGGTGCTGCTGATAGAGTTCTAAATCAACTTCTGACTGAAATGGATGGCATGTCTGCCAAAAAGACTGTGTTCATAATTGGGGCCACCAACAGACCTGACATCATTGACCCAGCACTTCTTCGTCCTGGACGTCTGGATCAATTGATCTATATTCCCCTTCCTGATGAGGAGTCCCGTTATCAGATCTTCAAGGCCTGCATGCGAAAGTCACCTGTCTCAAAAGATGTTGATTTGAGTGCGCTAGCTAAGTACACTCAAGGTTTCAGCGGTGCTGATATAACAGAGATATGCCAGCGAGCTTGCAAATATGCTATAAGAGAAAACATAGAAAAGGACATAGAGCGAGAGAGGAAGAGAAGAGAAAACCCTGAGGCCATGGATGAAGACATTGAGGAAGATGTTGCAGAGATCAAGGCTGCTCATTTTGAAGAGTCAATGAAGTATGCACGCAGGAGTGTTAGTGATGCTGATATCCGCAAATACCAGTCATTTGCTCAGACCTTGCAGCAATCCCGGGGCTTTGGAACTGAATTTAGGTTTGCAGAGACTGAAGGTAGGAGCACTGGATCTGACCCCTTTGCAACTTCTGCTGCTGGGGCTGATGACGATGATCTATATAGTTAG 2304 0.4531 MSHQGESSDSKSGKKDFSTAILERKKSPNRLIVDEAVNDDNSVVSMHPDTMEKLQLFRGDTILIKGKKRKDTICIALADETCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAYLKPYFLESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRENFKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQIFKACMRKSPVSKDVDLSALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERKRRENPEAMDEDIEEDVAEIKAAHFEESMKYARRSVSDADIRKYQSFAQTLQQSRGFGTEFRFAETEGRSTGSDPFATSAAGADDDDLYS 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi640g00005 767 Pfam Cell division protein 48 (CDC48), domain 2 132 195 IPR004201 -
Sebi640g00005 767 SMART AAA_5 241 377 IPR003593 GO:0016887
Sebi640g00005 767 SMART AAA_5 476 615 IPR003593 GO:0016887
Sebi640g00005 767 SMART CDC48_2_2 130 196 IPR004201 -
Sebi640g00005 767 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 428 IPR027417 -
Sebi640g00005 767 Pfam AAA+ lid domain 635 676 IPR041569 -
Sebi640g00005 767 Pfam AAA+ lid domain 369 401 IPR041569 -
Sebi640g00005 767 FunFam Transitional endoplasmic reticulum ATPase 206 373 - -
Sebi640g00005 767 FunFam Cell division control 48 113 209 - -
Sebi640g00005 767 SUPERFAMILY ADC-like 26 110 IPR009010 -
Sebi640g00005 767 FunFam Transitional endoplasmic reticulum ATPase 430 613 - -
Sebi640g00005 767 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 438 726 IPR027417 -
Sebi640g00005 767 CDD RecA-like_CDC48_r2-like 451 611 - -
Sebi640g00005 767 SUPERFAMILY Cdc48 domain 2-like 112 204 IPR029067 -
Sebi640g00005 767 Gene3D - 617 725 - -
Sebi640g00005 767 PANTHER AAA-FAMILY ATPASE 367 731 - -
Sebi640g00005 767 MobiDBLite consensus disorder prediction 741 767 - -
Sebi640g00005 767 ProSitePatterns AAA-protein family signature. 345 363 IPR003960 GO:0005524|GO:0016887
Sebi640g00005 767 Pfam Cell division protein 48 (CDC48), N-terminal domain 30 111 IPR003338 -
Sebi640g00005 767 Gene3D - 113 194 - -
Sebi640g00005 767 Gene3D - 426 613 IPR027417 -
Sebi640g00005 767 Gene3D - 195 393 IPR027417 -
Sebi640g00005 767 CDD RecA-like_CDC48_r1-like 209 363 - -
Sebi640g00005 767 Gene3D - 7 112 - -
Sebi640g00005 767 FunFam Transitional endoplasmic reticulum ATPase 7 112 - -
Sebi640g00005 767 Pfam ATPase family associated with various cellular activities (AAA) 245 365 IPR003959 GO:0005524|GO:0016887
Sebi640g00005 767 Pfam ATPase family associated with various cellular activities (AAA) 480 613 IPR003959 GO:0005524|GO:0016887
Sebi640g00005 767 ProSitePatterns AAA-protein family signature. 583 601 IPR003960 GO:0005524|GO:0016887
Sebi640g00005 767 SMART CDC48_N_2 30 113 IPR003338 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi640g00005 Sebi-Chr640 84421 89292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi640g00005 409 739 Calmodulin-binding Proteins AT3G56690 42.598 4.04e-80 275