Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi63g00042 ATGGTTTACTTACAAACATTGTTCTTTCTTCTGCTTTCAACATTTGGTCACTCCCTTCCAAGGCGCCAGTACCACCACAGCCCTTCTCATTCCTTACAAACAGATAAAGCCGCTCTTTTGGAATTCAAAAAGACAATCACATCAGACCCGCATTCCTCACTTGCTAACTGGGATGAAGCTGTTCATGTGTGCAACTTCACAGGTGTTGAATGCGACAAATTCCATCACCGTGTAACACACCTAATCCTTCATGATAATGCTCTAGTGGGGCTGCTTTCACCTGTTCTTTCCAATCTCACTGGACTGCATGTCCTTGAGATTGTTCACAATCTCTTACATGGCATTATTGCACCTGAATTTTCCTCCCTCAGACATGTCCACCGTATCATTCTTGAGGGGAATAACTTGCATGGTTCAATACCAGAGTCCTTTTCCCAGCTTTCCAAGCTTAACCTTCTAATTATTAAGGATAACAATATAACAGGTTCACTTCCTCCAACTCTCTTTTCCAATTGCACTCTACTAGAAATTGTGGACTTCTCTGGCAACTCCCTCACTGGTCAAATCCCAGAAGAGCTTGGAAACTGCCCAGGCCTATGGAGTATCAGTTTATACAACAATCAATTTACAGGACAGCTTCCTCTCTCTTTCACGAATCTATCAGTTGAAAATTTAGACGTGGAATACAATTACTTGTCTGGTGAATTGCCCACAAAGTTTTTAAGCAGCTGGCCATATCTGCTTTACCTTCATTTATCATACAACCATATGGTAAGTCATGATAACAACACCAATCTTGATCCATTTTTTACTGCTCTTAGAAACAACAATATTCTAGAGGAGCTTGAATTGGCAGGCATGGACCTTGGGGGATGTTTCTCCAATACTGTCGCCAGCCAACTTGGCACCAGTCTAAGAACTCTACTCCTGCAGGAAAACCAAATTTTTGGATCAATTCCTCACATCTTAGCAAATCTTTCAAGGCTTTTGATCCTGAATTTAACGTCCAATCTTCTAAATGGAACTATTCCCTCCGAGATCTGCAGATTACCAAACTTGGAACAACTTTTCTTATCACACAACCGTTTTAAAACTTCAATTCCAGAAGCAATAGGGAAGTGTGAACATTTGGGTCTTCTAGATCTGTCACACAACGAATTTTCTGGTAGGATTCCAGAAAGTTTGGGAAATTTGTTTCGACTGAATTATTTGTTTCTCAACAATAACCTTCTCTCAGGAACAATACCTCCTACATTGGGAAGGTGCATTAATCTGTACAAGCTTGATTTGTCCTATAATAGATTAACAGGAAACATCTCACTAGAACACTCAGGCTTGCGTGAGATCAGAATTTTCATCAATGTCTCTCATAATCATCTTGAAGGTCCATTGCCAATTGAGCTCAGCAAATTAGAAAAGGTTCAGGAGATGGATCTTTCTTCAAATCACCTAACTGGAACTATCTTCCCTCAGATAGCAGGATGCATTGCTGTTTCCAGGATAAATTTTTCAAACAATTCTCTTCAAGGTAAGCTGCCACAATCCCTAGGTGATTTGAGGAACCTAGAATCCTTTGATGTTTCAAGAAATCAATTATCAGGATTGATACCAGCAACACTTGGTAAAATTGACACACTCACTTTTCTCAATTTATCATACAATAACCTGGAAGGAATGATTCCATCTGGTGGTATCTTTAATTCAGTATCAAATTTTTCGTTCTTGGGAAATCCACGACTTTGTGGGACAATTGCTGGTGTACCCTTGTGCTCTCAAAGGAGACGATGGTTTCACACTCGTTTGTTCTTGATTATATTCATTTTGGTCATTTTCATATCAACACTCTTGTCAACAATTTGCTGTGTAATTGCATGCAAGCGTGTTGAAGTAAGCATCTCCTCTCAGAGTACTGAGGCAAGAAATAAACCAGCTAGACCTGAGTTGATAAGTAACTTCCCAAGGATCACATATAAGGAACTATCAGATGCCACAGGAGGATTTGACAATCAGAGACTCGTTGGATCAGGTAGTTATGGGCGCGTCTACAAGGGAGTTCTTGCAAATGGGACACCAATAGCAGTTAAGGTGCTGCATGTGCAATCTGGAAATTCAACCAAGAGTTTTAACAGAGAATGCCAAGTTTTGAAGAGAATTAGGCATAGAAATCTGATAAGGATTATCACAGCATGTAGCTTACCAGATTTTAAGGGTCTTGTTCTACCTTATATGGCCAATGGGATGGCCTATCTGCATCATCATTCTCCAGTCAAAGTCATACACTGTGATCTAAAACCAAGCAACGTACTTCTCAATGATGACATGACAGCTCTAGTTTCTGACTTTGGGATTGCAAGGCTATTTACCAGTGCCGGAGGAGGTAACGGTGGGGCTATTGATAACATGGGGAAATCTACTGCAAATTTGTTATGGGGATCCATTGGATATATTGCCCCAGAATATGGATTTGGATCAAATACATCTACCAAAGGAGATGTCTATAGCTTTGGCATTCTAGTTCTTGAGATGGTTACTAGAAAAAGACCAACAGATGACATGTTTGTTGGTGGGTTAAGTCTGCACAAATGGGTAAAGAGTCACTATCATGGAAGGGTAGAAAAAGTGGTAGACCCTGCTTTGGTGACAGCTTCAAGAGATCAATCACAAGAGGTTAAAAGGATGTGGGAAATTGCTATTGCGGAGTTAATTGAGTTGGGGATCCTTTGCACACAGGAGTCACCTTCAACTAGACCTACCATGCTTGATGCAGCAGATGACTTGGATCGTCTCAAGAGATACCTTACTGGGGACACAAGTGGAACTTTTGCCTCATCTCTTGGAATTTCATCTTCCACCATAGGTGGTGATTGA 2868 0.4062 MVYLQTLFFLLLSTFGHSLPRRQYHHSPSHSLQTDKAALLEFKKTITSDPHSSLANWDEAVHVCNFTGVECDKFHHRVTHLILHDNALVGLLSPVLSNLTGLHVLEIVHNLLHGIIAPEFSSLRHVHRIILEGNNLHGSIPESFSQLSKLNLLIIKDNNITGSLPPTLFSNCTLLEIVDFSGNSLTGQIPEELGNCPGLWSISLYNNQFTGQLPLSFTNLSVENLDVEYNYLSGELPTKFLSSWPYLLYLHLSYNHMVSHDNNTNLDPFFTALRNNNILEELELAGMDLGGCFSNTVASQLGTSLRTLLLQENQIFGSIPHILANLSRLLILNLTSNLLNGTIPSEICRLPNLEQLFLSHNRFKTSIPEAIGKCEHLGLLDLSHNEFSGRIPESLGNLFRLNYLFLNNNLLSGTIPPTLGRCINLYKLDLSYNRLTGNISLEHSGLREIRIFINVSHNHLEGPLPIELSKLEKVQEMDLSSNHLTGTIFPQIAGCIAVSRINFSNNSLQGKLPQSLGDLRNLESFDVSRNQLSGLIPATLGKIDTLTFLNLSYNNLEGMIPSGGIFNSVSNFSFLGNPRLCGTIAGVPLCSQRRRWFHTRLFLIIFILVIFISTLLSTICCVIACKRVEVSISSQSTEARNKPARPELISNFPRITYKELSDATGGFDNQRLVGSGSYGRVYKGVLANGTPIAVKVLHVQSGNSTKSFNRECQVLKRIRHRNLIRIITACSLPDFKGLVLPYMANGMAYLHHHSPVKVIHCDLKPSNVLLNDDMTALVSDFGIARLFTSAGGGNGGAIDNMGKSTANLLWGSIGYIAPEYGFGSNTSTKGDVYSFGILVLEMVTRKRPTDDMFVGGLSLHKWVKSHYHGRVEKVVDPALVTASRDQSQEVKRMWEIAIAELIELGILCTQESPSTRPTMLDAADDLDRLKRYLTGDTSGTFASSLGISSSTIGGD 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi63g00042 955 Gene3D Ribonuclease Inhibitor 262 596 IPR032675 -
Sebi63g00042 955 Gene3D Ribonuclease Inhibitor 32 191 IPR032675 -
Sebi63g00042 955 ProSiteProfiles Protein kinase domain profile. 667 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi63g00042 955 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 358 926 - -
Sebi63g00042 955 SMART serkin_6 667 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi63g00042 955 SUPERFAMILY L domain-like 300 582 - -
Sebi63g00042 955 SUPERFAMILY Protein kinase-like (PK-like) 643 926 IPR011009 -
Sebi63g00042 955 Pfam Protein kinase domain 743 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi63g00042 955 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Sebi63g00042 955 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 738 938 - -
Sebi63g00042 955 FunFam Leucine-rich repeat receptor-like protein kinase 32 191 - -
Sebi63g00042 955 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 648 742 - -
Sebi63g00042 955 SUPERFAMILY L domain-like 33 287 - -
Sebi63g00042 955 Gene3D Ribonuclease Inhibitor 192 261 IPR032675 -
Sebi63g00042 955 Gene3D Phosphorylase Kinase; domain 1 648 740 - -
Sebi63g00042 955 SMART LRR_typ_2 350 374 IPR003591 -
Sebi63g00042 955 SMART LRR_typ_2 398 422 IPR003591 -
Sebi63g00042 955 SMART LRR_typ_2 147 171 IPR003591 -
Sebi63g00042 955 SMART LRR_typ_2 519 542 IPR003591 -
Sebi63g00042 955 ProSitePatterns Protein kinases ATP-binding region signature. 673 695 IPR017441 GO:0005524
Sebi63g00042 955 FunFam LRR receptor-like serine/threonine-protein kinase EFR 302 595 - -
Sebi63g00042 955 ProSitePatterns Serine/Threonine protein kinases active-site signature. 758 770 IPR008271 GO:0004672|GO:0006468
Sebi63g00042 955 Pfam Leucine rich repeat 304 363 IPR001611 GO:0005515
Sebi63g00042 955 Gene3D Transferase(Phosphotransferase) domain 1 741 938 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi63g00042 Sebi-Chr63 1581760 1585114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi63g00042 33 916 Receptor kinase-like Gene Family AT3G47570 33.064 5.42e-145 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Sebi63g00042 Pkinase 8.5e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi63g00042 - - gmx:100815766 1449.88