Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi63g00030 ATGATGAATGGTTCCCAAAAATCCTCAACTCCATACACCTCTCTGTATTCCAATCCCCTCAATAACGTCAATGAGCTCAGGCACTGTCGTAGTTGCAGCACCGATTATGGCCAATTACGCTTAGCTTCCACCAAAGGTGACACCTTTCACTTTGAAGATTTCAGGAATGACCATGACAACAAAGAAAACGCAAATGGGCCATCTTCTTCTCTGCCTAAACCCTTCTCAAAGTCCAAGTCTTTGTCCACAGACAGGGTTCTTAAGCCCACCTCACTCCAGTTCTGTATGCAAATGAATGACCCTCTTGATTCTCAACGTTCCTCCTCTTTGAATATTTGGGACTACTCTGACTCTGATGCTGCTCCTGCTTCTTCCTGGTCCACTCTGCCCAATAAGTCTTTGATATGTAGACCCTTGCCTATTGATATTGGAAGGTGTACTTGTGTTATTGTGAAGGAAGCAATGCCACAGGGACTATCTGGGGGCAGTTTATTCTCTCTTTACACCTATGAAGGTCAGGGACGGCAGAATAGGAAACTAGCTGTGGCCCAACACAAGCGGCGGAATGGGAGGTCTCAATTCATTGTAGCTCAGAATGTAAAAGGACTACTGTCCAATTCAGATGATAGTTTCCTTGGGACCGTAACAGCTAACCTCATGGGCTCAAAATACCACATTTGGGATCAGGGACATCGTCATGATTCTCATAGTAAACAACCAAAGCCACCTCTAGCTGTTGTGAAGTATATACCTACAGTAGCAACATGTACAGGAAGTCACAGAAGCATTAAGGCATACATACCCAAGCATCAATCTATGTCACTCAAGAACACAGCCCAGGTACAGCATATTAAAGGATTGCCAATGAATTGGGAGGGAAAATTAGACAAAGTCCATCAACTATATTCAAGGATTCCACTGTACAACAAGATTTCAAAGCAATTTGAGCTTGACTACAGAGATAAAGGAAGGACAGGACTTAGAGTCCAAAGATCAGTGAAAAATTTTCAACTGACTTTAGAGGAGAATGGGAAGCAGACCATCCTACAGCTAGGGAGGGTTGGAAAATCAAAATTTGTTATGGATTACAGATATCCTTTGACAGGTTACCAGGCGTTTTGCATATGTTTGGCTTCCATTGATGCAAAGCTTTGCTGCACCGTATAG 1167 0.4319 MMNGSQKSSTPYTSLYSNPLNNVNELRHCRSCSTDYGQLRLASTKGDTFHFEDFRNDHDNKENANGPSSSLPKPFSKSKSLSTDRVLKPTSLQFCMQMNDPLDSQRSSSLNIWDYSDSDAAPASSWSTLPNKSLICRPLPIDIGRCTCVIVKEAMPQGLSGGSLFSLYTYEGQGRQNRKLAVAQHKRRNGRSQFIVAQNVKGLLSNSDDSFLGTVTANLMGSKYHIWDQGHRHDSHSKQPKPPLAVVKYIPTVATCTGSHRSIKAYIPKHQSMSLKNTAQVQHIKGLPMNWEGKLDKVHQLYSRIPLYNKISKQFELDYRDKGRTGLRVQRSVKNFQLTLEENGKQTILQLGRVGKSKFVMDYRYPLTGYQAFCICLASIDAKLCCTV 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi63g00030 388 SUPERFAMILY Tubby C-terminal domain-like 123 387 IPR025659 -
Sebi63g00030 388 MobiDBLite consensus disorder prediction 63 82 - -
Sebi63g00030 388 PANTHER TUBBY-RELATED 79 385 - -
Sebi63g00030 388 Pfam Tub family 137 381 IPR000007 -
Sebi63g00030 388 Gene3D Tubby Protein; Chain A 131 381 IPR025659 -
Sebi63g00030 388 MobiDBLite consensus disorder prediction 52 82 - -
Sebi63g00030 388 PRINTS Tubby superfamily signature 211 235 IPR000007 -
Sebi63g00030 388 PRINTS Tubby superfamily signature 344 363 IPR000007 -
Sebi63g00030 388 PRINTS Tubby superfamily signature 365 387 IPR000007 -
Sebi63g00030 388 PRINTS Tubby superfamily signature 324 340 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi63g00030 Sebi-Chr63 835564 838146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi63g00030 69 281 TUB Transcription Factor Family AT1G16070 54.825 5.38e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Sebi63g00030 Tub 3e-41 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi63g00030 K19600 - qsa:O6P43_017913 507.679