Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi63g00005 GTACGTTTGAATGGAGTAGCAACTTTTATTGGTATAGTTGGGCTTACTGTAGCTGCTGCTGTGCTTGCCGTCCTCTTGGGAAGATACTTTTCTGGCCATACGAAAGATCTAGATGGAAATGTGCAATTTGTTGGCGGAAAGACTAGTATTAGTGATGCAGTAGATGGCGTCATCAAAATTTTTACCATTGCAGTAACAATTGTGGTTGTTGCAGTGCCTGAAGGTCTACCTTTAGCAGTTACTTTAACCCTGGCATACTCAATGCGGAAAATGATGGCAGACAAAGCCTTGGTGCGAAGACTGTCAGCATGCGAAACAATGGGCTCTGCTACAACAATTTGCAGTGATAAGACTGGAACTTTGACCTTAAATCAGATGACTGTAGTTGAGGCATATGCTGGGGGGAAGAAACTAAATCCACCAGATGACTTGTCAAAATTGCATCCAGAAGTCCTATCCCTGATAAATGAAGGCATAGCACAAAATACAACTGGCAACGTTTTCATGTCTAAGGATGGTGGTGAGACAGAGGTGTCAGGATCTCCTACAGAGAAGGCAATTCTTTCTTGGGCCGTGAAGTTGGGGATGAATTTTGATCTTATCAGATCAACTTCAAAAATTCTCCATGTCTTCCCCTTCAATTCTGAGAAAAAGCGGGGTGGTGTTGCTGTGAAACTGGCGGACTCTGGTGTGCATATACATTGGAAAGGAGCTGCAGAGATAGTTCTAGGAACTTGTACTCAGTATCTTGATTCAAATGGTCAACGACAATCAATTGAAGAAGAGAAGGCATTCTTCAAGAAAGCTATTGATGACATGGCTGCTCGGAGCTTGCGTTGTGTTGCAATTGCATACAGATCATATGAATTGGACAAAATTCCATCTAATGAGGAGGATTTAGACAAGTGGTCCTTACCAGAACACGAGCTTGTTTTGCTTTCTATTGTTGGAATTAAGGATCCTTGTCGCCCTGGAGTCAAAGATGCCGTGGAAGTATGCACTAGAGCTGGCGTTAAGGTACGCATGGTTACTGGAGACAATCTTCAAACAGCAAAAGCAATAGCCTTGGAATGCGGAATACTGGCTTCAATTGAAGATGCTGTTGAGCCAAATATAATTGAAGGAAAGACATTCCGTGAACTATCTGAAAAAGACAGAGAACAAGTTGCTAAGAAAATAACGGTGATGGGAAGGTCTTCTCCAAATGACAAGCTTTTGCTGGTGCAAGCACTGCGTAAAAGTGGTGAAGTTGTTGCTGTCACGGGAGATGGCACCAATGATGCTCCTGCGCTTCATGAGATTGATTTCACCATAAACACTTCTCACTAA 1329 0.4281 VRLNGVATFIGIVGLTVAAAVLAVLLGRYFSGHTKDLDGNVQFVGGKTSISDAVDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYAGGKKLNPPDDLSKLHPEVLSLINEGIAQNTTGNVFMSKDGGETEVSGSPTEKAILSWAVKLGMNFDLIRSTSKILHVFPFNSEKKRGGVAVKLADSGVHIHWKGAAEIVLGTCTQYLDSNGQRQSIEEEKAFFKKAIDDMAARSLRCVAIAYRSYELDKIPSNEEDLDKWSLPEHELVLLSIVGIKDPCRPGVKDAVEVCTRAGVKVRMVTGDNLQTAKAIALECGILASIEDAVEPNIIEGKTFRELSEKDREQVAKKITVMGRSSPNDKLLLVQALRKSGEVVAVTGDGTNDAPALHEIDFTINTSH 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi63g00005 442 NCBIfam HAD-IC family P-type ATPase 53 139 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi63g00005 442 SUPERFAMILY Calcium ATPase, transmembrane domain M 2 108 IPR023298 -
Sebi63g00005 442 PANTHER CATION TRANSPORTING ATPASE 2 437 - -
Sebi63g00005 442 Pfam haloacid dehalogenase-like hydrolase 111 435 - -
Sebi63g00005 442 Gene3D - 157 313 IPR023299 GO:0000166
Sebi63g00005 442 SUPERFAMILY HAD-like 102 438 IPR036412 -
Sebi63g00005 442 SFLD C1.7: P-type atpase like 96 436 - -
Sebi63g00005 442 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 120 326 IPR023299 GO:0000166
Sebi63g00005 442 PRINTS P-type cation-transporting ATPase superfamily signature 314 325 - -
Sebi63g00005 442 PRINTS P-type cation-transporting ATPase superfamily signature 114 128 - -
Sebi63g00005 442 PRINTS P-type cation-transporting ATPase superfamily signature 336 346 - -
Sebi63g00005 442 PRINTS P-type cation-transporting ATPase superfamily signature 421 440 - -
Sebi63g00005 442 Gene3D - 1 136 - -
Sebi63g00005 442 ProSitePatterns E1-E2 ATPases phosphorylation site. 116 122 IPR018303 -
Sebi63g00005 442 Gene3D - 314 441 IPR023214 -
Sebi63g00005 442 FunFam Calcium-transporting ATPase 124 321 - -
Sebi63g00005 442 SFLD p-type atpase 96 436 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi63g00005 Sebi-Chr63 67221 72439 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi63g00005 1 435 Primary Pumps ATPases AT3G21180 78.391 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi63g00005 K01537 - gmx:100777143 747.658