Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi639g00019 ATGGTGTTCACTTTTGAGTCTCAGAAGTCAGTGCCAGCACCCTTCCTGACAAAGACATACCAGCTTGTTGATGACCCTAGGACTGATCACATTGTGTCTTGGGGTGAAGATGAAACTACATTTGTTGTATGGAGACCCCCTGAGTTTGCTAGAGATCTTCTTCCAAACTATTTCAAACATAACAACTTCTCAAGTTTTGTTAGGCAACTCAATACCTATGGTTTCAAGAAGGTAGTTGCTGATAGGTGGGAGTTTGCAAATGAGTTTTTCAGAAAAGGAGCTAAGCACCTTTTATGTGAAATCCATAGGAGAAGAACACCTCAGCACAATCACCAACTCTACCATGATCAACCACCACAGATTCTTCAGAAAGATGAAAATCTATGTTGGCTTGACAATACTCCATCATTACCTTCTCCTAAATCAAGCACAGCTGATATTTTAACAGCACTTTCAGAAGATAACCAAAGACTAAGGAGAAAGAACATTATGCTCTTATCAGAGCTAAGTCACATGAAGAATCTATACAATGACATTATATATTTCATCCAAAACCATGTCAAACCAGCACCCTTAGAACAAAGAAGCAGCAGTGCTATTCCAAAGCTGGTGGAATTGGATTCATTGCCTGATTCTCCAACTGATATGGGAGTCAGAACTGCAAAGAGTCATATTATAGAGAAGTCTTTGATAAATTCTATTGAGGAATCAAATAGTTCTGTAAAACTCTTTGGGGTCCCTCTAAGTGGCAAAAAAAGATTGCACCCAGATAACATGAATTGA 783 0.3883 MVFTFESQKSVPAPFLTKTYQLVDDPRTDHIVSWGEDETTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADRWEFANEFFRKGAKHLLCEIHRRRTPQHNHQLYHDQPPQILQKDENLCWLDNTPSLPSPKSSTADILTALSEDNQRLRRKNIMLLSELSHMKNLYNDIIYFIQNHVKPAPLEQRSSSAIPKLVELDSLPDSPTDMGVRTAKSHIIEKSLINSIEESNSSVKLFGVPLSGKKRLHPDNMN 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi639g00019 260 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 196 IPR027725 -
Sebi639g00019 260 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi639g00019 260 FunFam Heat stress transcription factor B-4 7 105 - -
Sebi639g00019 260 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi639g00019 260 Gene3D - 7 105 IPR036388 -
Sebi639g00019 260 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi639g00019 260 SUPERFAMILY "Winged helix" DNA-binding domain 12 104 IPR036390 -
Sebi639g00019 260 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi639g00019 260 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi639g00019 260 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi639g00019 Sebi-Chr639 345807 346928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi639g00019 9 255 HSF AT1G46264 52.349 3.62e-92 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sebi639g00019 HSF_DNA-bind 1.8e-32 CL0123