Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi639g00016 ATGGAGGATGTGAGAGCAACATACACCATAGGGAAGGAGCTAGGGAGGGGACAATTTGGTGTGACACATTTGTGCACAAATAAGACAACAGGAGAGCAATTTGCATGCAAGACAATTGCAAAGAGGAAGCTTGTGAATAAGGAAGACATAGAGGATGTGAGGAGAGAGGTGCAAATCATGCACCATCTCACAGGTCAACCTAACATTGTGGAACTCAAAGGTGCTTATGAGGATAAACAATCGGTTCATTTGGTTATGGAGTTATGTGCTGGTGGTGAGCTCTTTGATCGCATCATTGCAAAAGGACATTACACTGAACGTGCTGCTGCTTCCTTGTTGAGAACCATAGTGCAGATTGTTCACACTTTCCATTCCATGGGTGTCATTCATAGAGACCTTAAGCCTGAGAATTTCCTCTTGTTGAATAAGGATGAGAATTCACCCCTCAAGGCCACAGATTTTGGTCTATCTGTCTTTTATAAGCAAGGAGAGACTTTCAAAGACATTGTTGGTAGTGCATATTATATAGCACCTGAGGTCTTGAAGAGAAAATATGGGCCAGAAGTTGACATATGGAGTGTTGGTGTCATGCTATACATTCTTCTATGTGGTGTCCCTCCATTTTGGGCAGAATCCGAACATGGTATATTCAATGCCATTTTAAGAGGTCACATTGACTTCACAAGCGACCCATGGCCTTCAATTTCACCTGCAGCAAAAGATCTTGTAAGGAAAATGTTGAATTCAGATCCCAAACAGAGACTCACAGCATACGAAGTTCTAAATCATCCTTGGATCAAGGAGGATGGAGAAGCACCAGATAAACCACTTGACAATGCAGTGCTGAATAGGCTCAAACAATTCAGAGCAATGAACCAATTCAAGAAAGTTGCTCTCAGGGTCATTGCTGGATGTTTATCAGAAGAAGAAATCATGGGGTTGAAGGAAATGTTCAAGGGAATGGACACTGACAACAGTGGAACCATTACAATTGAAGAGCTCAAGCAAGGGCTTGCAAAACAAGGGACAAAGCTAACAGAACAAGAAGTTAAGCAATTAATGGAAGCTGCTATATGTATATGTCTCATTTTTGTACCACATAAACCATGCAGGTTCATTACTACTGAAGAACTAGAACAAGCTCTCCATGAATTTAACATGCATGATGGTAGAGACATCAATGAAATCCTTAAAGAAGTTGATGGAGATAATGATGGCCGCATTAACTATGATGAGTTTGCGGCAATGATGAGGAAAGGGAATCCAGAAGCTCATACTAAGAAGAGGCGTGATTCATTTGTTTCACATTAA 1311 0.4111 MEDVRATYTIGKELGRGQFGVTHLCTNKTTGEQFACKTIAKRKLVNKEDIEDVRREVQIMHHLTGQPNIVELKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIVQIVHTFHSMGVIHRDLKPENFLLLNKDENSPLKATDFGLSVFYKQGETFKDIVGSAYYIAPEVLKRKYGPEVDIWSVGVMLYILLCGVPPFWAESEHGIFNAILRGHIDFTSDPWPSISPAAKDLVRKMLNSDPKQRLTAYEVLNHPWIKEDGEAPDKPLDNAVLNRLKQFRAMNQFKKVALRVIAGCLSEEEIMGLKEMFKGMDTDNSGTITIEELKQGLAKQGTKLTEQEVKQLMEAAICICLIFVPHKPCRFITTEELEQALHEFNMHDGRDINEILKEVDGDNDGRINYDEFAAMMRKGNPEAHTKKRRDSFVSH 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi639g00016 436 Gene3D - 370 435 - -
Sebi639g00016 436 FunFam calcium-dependent protein kinase 1 94 273 - -
Sebi639g00016 436 FunFam Calcium-dependent protein kinase 1 10 93 - -
Sebi639g00016 436 ProSitePatterns EF-hand calcium-binding domain. 322 334 IPR018247 -
Sebi639g00016 436 SMART efh_1 313 341 IPR002048 GO:0005509
Sebi639g00016 436 SMART efh_1 392 420 IPR002048 GO:0005509
Sebi639g00016 436 Gene3D Transferase(Phosphotransferase) domain 1 94 273 - -
Sebi639g00016 436 CDD STKc_CAMK 8 265 - -
Sebi639g00016 436 ProSitePatterns EF-hand calcium-binding domain. 401 413 IPR018247 -
Sebi639g00016 436 ProSiteProfiles Protein kinase domain profile. 8 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi639g00016 436 CDD EFh 314 418 IPR002048 GO:0005509
Sebi639g00016 436 ProSiteProfiles EF-hand calcium-binding domain profile. 388 423 IPR002048 GO:0005509
Sebi639g00016 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Sebi639g00016 436 Gene3D - 274 358 - -
Sebi639g00016 436 PANTHER SERINE/THREONINE-PROTEIN KINASE 5 412 - -
Sebi639g00016 436 Pfam EF hand 314 340 IPR002048 GO:0005509
Sebi639g00016 436 Pfam EF hand 392 419 IPR002048 GO:0005509
Sebi639g00016 436 ProSitePatterns Protein kinases ATP-binding region signature. 14 41 IPR017441 GO:0005524
Sebi639g00016 436 SUPERFAMILY Protein kinase-like (PK-like) 7 267 IPR011009 -
Sebi639g00016 436 Pfam Protein kinase domain 8 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi639g00016 436 SUPERFAMILY EF-hand 306 418 IPR011992 -
Sebi639g00016 436 Gene3D Phosphorylase Kinase; domain 1 9 93 - -
Sebi639g00016 436 SMART serkin_6 8 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi639g00016 436 ProSiteProfiles EF-hand calcium-binding domain profile. 309 344 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi639g00016 Sebi-Chr639 299517 302965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi639g00016 1 431 EF-hand Containing Proteins AT5G12180 80.610 0.0 761
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Sebi639g00016 Pkinase 6.1e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi639g00016 K13412 - gmx:100781355 786.563