Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi637g00021 ATGGATCACACGGGCAAACCCAACCACTCGCTCTCCTACTCCACTCTCTTCAATCTTGAGTCTCTGATGAACTTTCAACTTCCACAACAAGATGATGATTTTGATTATTATGGGAATAGTAGTCAGGATGAAGAGAGCAGAGGTAGCCAAGGTGGTGGGGCAATTGCAAATCACAGTAATGGCAATGTGCACGCAAAGGAGGTGAATTTGTTAAAGAAGAGGGCGTGGTCGCAAAACAGTGATGATGAGGATGAGAGCAGTTTTTACAGGACATACATGACAGAGGAGCGGTATAGATCAATGCTCGGAGACCATGTTCAGAAATATAAGAGGAGGTCTAAGGATGCCTCCTCTAGTCCTGCTCAAAATCGGGTTGCTGTCCCACTTGTCAAAAGTAACACTGGCTCAAAAGCACGAAAGTTAGGGAATGATCTCAGGGGAGGACTGCAAGCTGCAGAGACTACATCTGAATGGGTATACGATTCCAATTCTCAGAAACCAGGAAACTACCGTGATGCAGATTTCATGCAGCAATATGCCACTGATAGGGTTATGTATGAACCTGCTACTTTAGAAATTGGGGATGGTATCGCTTACAAGATTCCTCCAATTTATGATAAATTGGCTTCAATGCTGAACCTTCCAAGCTTCCCTGATATCCATGTGGATGAGTTTTACTTAAAGGGTACCTTGGATTTGGGGTCCTTGGCTGCAATGATGGCTGCTGATAAAAGGTTTGGGAATAGAAACCGAGCTGGAATGGGGGAACCCCTATCTCAATATGAATCACTTCAGGCACGAATGAAGACCATGTCAGCTTCTAATTCACCTCATAAATTCAGTCTGAAAGTGACTGATGCTGGTTTAAATTCATCCATTCCGGAGGGAGCTGCTGGAAGCATAAAGCGATCTATTTGTCTGAGGGTGGTGTATTGCAGGTTTATTATGTTAAGGTTTTGGAAAAAGGTGACACCTACGAGGAGTGCTAGCATTCGCACCCGGAAACTATCTAGAGACATGCTGCTGTTCTGGAAACGAGTAGATAAGGAGATGGCTGAAGTGAGGAAAAGAGAGGAGAAAGAAGCTGCTGAAGCTTTGAGGCGTGAACAGGAACTTCGAGAAGCTAAGAGGCAGCAGCAAAGGCTTAATTTTCTCATACAACAAACTGAGCTGTACAGTCACTTTATGCAGAATAAGTCAAACATACTATCTTCGGAACCCATGGTAGAGGAGGAAACAAATGATCAAGATGCACTGTTTGACTCTTCAGATGTTGGGTCTAAGGAGGAGGAAGATCCAGAAGAGGCTGAATTGAAGAAAGAAGCTTTGAAGGCTGCTCAAGAAGCAGCCTCGAAGCAGAGAAGGTTGACTAGTGCTTTTGACAGTGAATGCCTGAGGCTGCGCCAGGTGGGTGAAACTGATTCACTCGCACAGGAAGTTGCAGGAGCAAGTAACATTGATTTGCAAACCCCATCAACCATGCCTGTGGCATCCACAGTTCAGACACCTGAATTATTTAAAGGTTGTCTAAAAGAATATCAGCTGAAAGGGCTTCAGTGGCTAGTTAATTGTTATGAGCAGGGTTTAAACGGTATACTAGCTGATGAGATGGGACTTGGAAAGACCATACAGGCTATGGCATTTTTAGCCCATTTAGCTGAGGAGAAAAACATATGGGGGCCTTTTCTGGTTGTTGCACCTGCTTCTGTATTAAACAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGAACTTAAAAGACTTCCATATTGGGGAGGGCTTTCAGAGCGGACAGTACTTAGGAAAAGTATTAACCCAAAGGATCTTTATCGTAGGGAAGCTAAATTCCACATTCTCATTACAAGCTATCAGCTATTAGTATCTGATGAGAAGTATTTTCGCCGCGTGAAATGGCAGTACATGGTTTTAGATGAAGCCCAGGCAATAAAAAGTTCAAACAGTATACGATGGAAGACACTCCTCAGCTTTAATTGTCGAAATCGCCTTCTGCTGACTGGTACACCTATTCAGAATAATATGGCAGAGCTGTGGGCTCTTCTGCACTTCATTATGCCAACTTTATTTGATAGCCATGAGCAGTTTAATGAGTGGTTCTCAAAAGGAATTGAGAACCATGCAGAACACGGGGGTACTTTGAATGAGCACCAACTTAATAGATTGCATTCAATTCTAAAACCTTTCATGCTACGGCGTGTTAAAAAAGATGTAATTTCTGAGCTGACAAGGAAAACTGAGATTATGGTGCATTGCAAGTTGAGTTCTCGGCAGCAGGCTTTTTATCAAGCAATTAAAAACAAGATATCTCTTGCTGAACTGTTTGATGGTAATCGTGGGCAGCTCAATGAGAAGAAAATTCTGAATTTAATGAATATTGTTATTCAACTAAGAAAGGTTTGCAACCATCCTGAGTTGTTCGAAAGGAGTGAGGGAAGCACATACTTTTACTTTGGAGAGATTCCAAATTCCCTTCCGCCTCCTCCATTTGGGGAATTGGAGGATGTATACTATCCTGGAAGTCACAACCCCATATCATATGAGATACCAAAACTTGTCTATCAAGAGATTATGCAAAGTTCTGAGACTTTCAGTTCAGCTGTTGGTCGTGGTGTCTACAGAGAATCTTTTCAGAAGTATTTTAATATTTTTAGACCAGAAAATGTTCATCGGTCTATCTTCTCAGAGGATATGATCGTTAAAAGTGGAAACTTGGTTTTACCCATTTGCTGGATTTGTCACCCCCAAGAGGTGACATTTTTGGCCACTGGTTCTTTTATGGAGCGACTGTTATTTTCTATGATGAGATGGGAACAGAAATTCCTTGATGAAGTTGTAGACTTTCTTACGGAGTCCATTATAGATGATCCTGAATGTAGTTTGCTTGAAAAAGGTAAAATGAGAGCTGTTACACGGATGTTGTTGCTGCCATCGAGATCTGAGACCAAGTATCTTCAGAAAAGGCTTCTTCACTCAGCATACACATATATCCCACCGGCTAGAGCTCCCCCAATTGGTGCTCACTGCTCTGATAGAAACTTCTCCTATAAAATGATTGAAGAATTACATGATCCTTGGGTTAAGAGGTTGTTTGTGGGATTTGCTCGTACATCTGAATGTAATGGGCCTAGAAGGCCTGGTCACCCTCATCATCATTTAATTCAAGAGATCGATTCTGAATTACCTGTTTCTCAGCCTGCACTTCAGTTGACACACAGTATTTTTGGCTCTTCACCACCTATGCGGAGTTTTGACCCAGCAAAATTGCTCACTGACTCTGGGAAGCTTCAAACACTTGATATATTACTGAAACGCTTACGGGCAGGAAACCATCGTGTTCTCTTGTTTGCTCAGATGACTAAGATGCTGAATATTTTGGAGGACTATATGAACTATAGAAGATATAAGTATTTTAGACTTGATGGGTCATCTACTATTCAGGATCGTAGAGACATGGTCAAAGACTTCCAGCAAAGGAGTGATATTTTTGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGCATCAACTTGACAGCTGCTGACACAGTCATATTTTATGAGAGTGATTGGAATCCAACATTGGATCTACAGGCAATGGATAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACTGTTTACCGACTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCTTAGAGCAAGTCAGAAAAGTACTGTACAGAACCTTGTCATGACTGGTGGTTCTGTTGGCGGTGATCTTTTGGCTCCTGAGGATGTTGTATCTTTGCTTCTGGATGATGTCCAATTGCAACAGAAATTAAAAGAAATCCCTCTCCAGGTAAAGGATAAGCAGAAGAAAAAACAACCTACGAAGGGTATACGGTTAAATGAAGAAGGTGATGCATCCCTGGAAGATTTGACAAACTCTGTAGCCCAGAGCACTAAAGATAATGATATTTCCATGGATCCAGAGGGACCAAAGTCCAGTAATAAAAAGAGAAAAGCAGCTTCTGACAAGCAAACTTCAAGGCCAAAGAATTCTCAGAAGATGACTGAATTCATAGATGATGAATTGGATGGTGCCCATCTAAATACTGATTCAGCGGGCCAGAAACCGAAGAGACCAAAGAGGACAAAGAAGAATGTGAATGAAAAAATTGAAGAGTCTTTTACTGGGACAGCTACCACATTCCCTGAGCAGATCCAATTTCCTCCGCGTGATATCAGTTCTGGAGGTTCTAGAGCAGAAACAGTCCAAAACGCCTGA 4275 0.4204 MDHTGKPNHSLSYSTLFNLESLMNFQLPQQDDDFDYYGNSSQDEESRGSQGGGAIANHSNGNVHAKEVNLLKKRAWSQNSDDEDESSFYRTYMTEERYRSMLGDHVQKYKRRSKDASSSPAQNRVAVPLVKSNTGSKARKLGNDLRGGLQAAETTSEWVYDSNSQKPGNYRDADFMQQYATDRVMYEPATLEIGDGIAYKIPPIYDKLASMLNLPSFPDIHVDEFYLKGTLDLGSLAAMMAADKRFGNRNRAGMGEPLSQYESLQARMKTMSASNSPHKFSLKVTDAGLNSSIPEGAAGSIKRSICLRVVYCRFIMLRFWKKVTPTRSASIRTRKLSRDMLLFWKRVDKEMAEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNILSSEPMVEEETNDQDALFDSSDVGSKEEEDPEEAELKKEALKAAQEAASKQRRLTSAFDSECLRLRQVGETDSLAQEVAGASNIDLQTPSTMPVASTVQTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGLSERTVLRKSINPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTRKTEIMVHCKLSSRQQAFYQAIKNKISLAELFDGNRGQLNEKKILNLMNIVIQLRKVCNHPELFERSEGSTYFYFGEIPNSLPPPPFGELEDVYYPGSHNPISYEIPKLVYQEIMQSSETFSSAVGRGVYRESFQKYFNIFRPENVHRSIFSEDMIVKSGNLVLPICWICHPQEVTFLATGSFMERLLFSMMRWEQKFLDEVVDFLTESIIDDPECSLLEKGKMRAVTRMLLLPSRSETKYLQKRLLHSAYTYIPPARAPPIGAHCSDRNFSYKMIEELHDPWVKRLFVGFARTSECNGPRRPGHPHHHLIQEIDSELPVSQPALQLTHSIFGSSPPMRSFDPAKLLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRRYKYFRLDGSSTIQDRRDMVKDFQQRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLQQKLKEIPLQVKDKQKKKQPTKGIRLNEEGDASLEDLTNSVAQSTKDNDISMDPEGPKSSNKKRKAASDKQTSRPKNSQKMTEFIDDELDGAHLNTDSAGQKPKRPKRTKKNVNEKIEESFTGTATTFPEQIQFPPRDISSGGSRAETVQNA 1424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi637g00021 1424 Gene3D - 1069 1327 IPR027417 -
Sebi637g00021 1424 Pfam Helicase conserved C-terminal domain 1103 1212 IPR001650 -
Sebi637g00021 1424 Pfam DNA-binding domain 326 401 IPR020838 GO:0003677
Sebi637g00021 1424 Coils Coil 349 388 - -
Sebi637g00021 1424 MobiDBLite consensus disorder prediction 1283 1304 - -
Sebi637g00021 1424 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 522 693 IPR014001 -
Sebi637g00021 1424 SMART helicmild6 1129 1212 IPR001650 -
Sebi637g00021 1424 FunFam Putative DNA helicase INO80 482 760 - -
Sebi637g00021 1424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 740 1282 IPR027417 -
Sebi637g00021 1424 ProSiteProfiles DBINO domain profile. 278 402 IPR020838 GO:0003677
Sebi637g00021 1424 CDD SF2_C_SNF 1091 1223 - -
Sebi637g00021 1424 Gene3D - 505 747 IPR038718 -
Sebi637g00021 1424 MobiDBLite consensus disorder prediction 422 436 - -
Sebi637g00021 1424 Pfam SNF2-related domain 525 812 IPR000330 GO:0005524|GO:0140658
Sebi637g00021 1424 Coils Coil 435 455 - -
Sebi637g00021 1424 MobiDBLite consensus disorder prediction 1305 1322 - -
Sebi637g00021 1424 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1103 1287 IPR001650 -
Sebi637g00021 1424 MobiDBLite consensus disorder prediction 30 57 - -
Sebi637g00021 1424 MobiDBLite consensus disorder prediction 1283 1424 - -
Sebi637g00021 1424 MobiDBLite consensus disorder prediction 30 61 - -
Sebi637g00021 1424 PANTHER HELICASE SRCAP-RELATED 411 905 - -
Sebi637g00021 1424 SMART ultradead3 506 701 IPR014001 -
Sebi637g00021 1424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 493 738 IPR027417 -
Sebi637g00021 1424 MobiDBLite consensus disorder prediction 407 436 - -
Sebi637g00021 1424 MobiDBLite consensus disorder prediction 1390 1424 - -
Sebi637g00021 1424 Gene3D - 748 817 IPR027417 -
Sebi637g00021 1424 MobiDBLite consensus disorder prediction 1323 1343 - -
Sebi637g00021 1424 FunFam DNA helicase INO80-like protein 1071 1323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi637g00021 Sebi-Chr637 479732 492375 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi637g00021 531 820 RAD5 or RAD16-like Gene Family AT5G43530 29.167 5.46e-26 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi637g00021 SNF2_N 1.4e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi637g00021 K11665 - gmx:100780615 1810.04