Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sebi637g00017 | ATGGAGAGTTTGTTGAAGGATTTCGAACTGAAAAACAAGGAGCGTTCCATCGAAGCTTTGAGTAGATGGAGATCTTACGTCTCTTTGGTCAAGAACCGTCGCAGAAGGTTCCGCAATGTCGCAGATCTCGAAAAACGTACCCAAACACAGGAGCACATCCAAAAGTTACAGGGAAAGATACGGTCTGTTATCATTGCCCAACAAGCAGCACTACATTTTACGGATGCTATTGGTACAACTGAATACAAGGTATCAGAGAAGACGAGAGAAGCTGGTTTTGGTATTGAACCAGATGATATTGCATCAGTTGTTCGAAGCCATGACTACAAGAACTACAGAAAAATTGGTGAAGTTGAAGGGATTATAAGTAAACTCTCAGTCTCAGTTGAAGAAGGTGTCAGTCAAGACAGTATACATAGCAGGCAAGAGATTTATGGACTCAACCGTTATCCTGAGAAGCCTTCTAAAAGCTTGCTGATGTTTGTTTGGGATGCATTGCATGATTTAACGCTAATCATTCTTATGGTTTGTGCTATAGTCTCTATAGGTATAGGGCTTCCCACTGAAGGGTGGCCAAAGGGTGTTTATGATGGTCTTGGAATCATACTCAGTGTATTTTTGGTAGTCATTGTTACTGCTATCAGTGACTACCAGCAATCCCTGCAGTTCAGGGATTTGGACAAAGAGAAGAAAAAGATCTTTGTTCAGGTCACCAGGGATGGGAAAAGACAGAAGATCTCAATTTATGATTTGGTAGTGGGAGATATTGTTCATTTGGCAACTGGTGATCAAGTTCCAGCTGATGGGGTTTATATATCAGGGTATTCATTGCTAATTGATGAATCAAGTTTGTCAGGTGAGAGTGAACCGGTAAATATAGATAAACAAAGACCTTTTCTTCTTTCAGGAACCAAAGTGCAAGATGGTCAGGGGAAGATGGTAGTTACAACTGTTGGCATGAGGACTGAATGGGGGAAGTTGATGGAAACTTTAAATGAGGGAGGAGAGGATGAGACTCCACTGCAGGTGAAATTGCATGGAGTTGCTACAATTATTGGTAAAATTGGTTTGACTTTTGCTGTGCTGACATTTGTGGTGTTGACAATAAGGTTTCTGGTTGAAAAAGGAGTTAATGGTGATTTTGGTAGTTGGTCTTCAAATGATGCATTGAAGCTGCTTGACTACTTTGCTATTGCTGTAACCATAATAGTTGTTGCAATTCCTGAAGGATTACCACTAGCTGTGACACTCAGTCTTGCTTTTGCAATGAAAAAATTGATGAATGACAGGGCACTTGTGAGACATCTTTCTGCATGTGAGACTATGGGTTCAGCTAGTTGCATTTGCACAGATAAGACAGGGACACTGACCACTAACCATATGGTGGTTAATAAAATTTGGATATGTGAAAAGACCATGGAAATGAAAGGTAATGAGAGTGCAGACAAACTGAAAACAGAGATATCTGAAGAAGTTCTAAGCATCCTTTTGCAGGCTATATTTCAAAATACTTCATCCGAAGTAGTTAAGGGCAAAGATGGAAATAAGACAATATTAGGAACACCAACTGAATCAGCATTGTTGGAATTTGGCTTGCTTTCAGGTGGTGATTTTGATGCCCAACGTAAAACCTGTGAGGTACTTATGGTTGAGCCTTTCAATTCATCCCGGAAGAAGATGTCTGTGCTTGTGGAACTTCCTGATGGAGGAGGGGTCAGAGCTTTCTGCAAAGGTGCATCAGAGATAGTATTAAAAATGTGTGACAAAATTATTGATTCTAATGGAACAGCTGTTGATCTTCCTGAAGAGCTAGCAAACAAAGTCTCTGATGTTATAAATGGCTTTGCCTCTGAAGCATTGAGAACTCTTTGTTTGGCTGTCAAAGATATAAATGAAAACCAAGGGGAAAAAAGCATCCCTGATAATGGCTATACTCTGATAGCCATTGTGGGAATCAAGGATCCTGTGCGCCCTGGGGTTAGGGAAGCTGTTCAAACTTGTTTAGCAGCTGGAATAACTGTCCGCATGGTCACTGGTGATAACATAAACACAGCTAGGGCTATAGCTAAAGAATGTGGTATACTTACTGAGGATGGTGTAGCCATAGAAGGACCAGCATTTCGTGACTTGTCTCCAGAGCAAATGAAGGATGTCATACCAAGAATTCAGGTAATGGCACGATCCTTACCTCTTGACAAGCATACCTTGGTAACCAATTTGAGGAATATGTTTGGTGAGGTTGTTGCTGTTACTGGTGATGGAACCAATGATGCTCCTGCACTGCATGAGTCAGACATTGGGCTTGCCATGGGGATAGCTGGAACCGAGGTTGCCAAAGAAAATGCTGATGTCATTATAATGGATGATAACTTCACTACTATTGTCAATGTGGCCAAATGGGGACGGGCCATATACATAAACATTCAAAAATTTGTGCAGTTCCAGTTAACAGTCAATGTTGTTGCTCTGGTTATTAACTTTGTTTCTGCATGCATCACTGGATCTGCTCCACTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATTATGGACACTCTGGGTGCATTGGCCCTGGCAACTGAACCTCCTAATGATGGACTTATGGAAAGACTCCCAGTTGGAAGGACAACAAGTTTTATCACCAAACCAATGTGGAGGAATATTTTCGGTCAAAGTTTATATCAACTAATTGTCCTTGCAATTCTCAATTTTGATGGGAAGAGGCTACTAGGACTTACTGGCTCAGATGCAACTATAATGCTCAACACTTTGATATTCAACTCCTTTGTATTTTGTCAGGTGTTTAATGAGATAAACAGCCGAGAAATTGAAAGGATAAACATATTCAGAGGCATGTTTGACAGCTGGATATTTTTTACTGTGATTTTCTCCACAGTGGTATTTCAAGTAATCATAGTTGAGTTCTTGGGAACATTTGCCAGCACGGTGCCTCTAAACTGGCAATTCTGGTTACTCAGCGTGGTAATTGGAGCAGTTAGCATGCCTATAGCTGCTATCCTCAAGTGCATCCCAGTTGAAAAAGATACTACAAAGCACCATGATGGTTATGAGGCACTGCCTTCTGGTCCTGAGCTGGCATGA | 3102 | 0.412 | MESLLKDFELKNKERSIEALSRWRSYVSLVKNRRRRFRNVADLEKRTQTQEHIQKLQGKIRSVIIAQQAALHFTDAIGTTEYKVSEKTREAGFGIEPDDIASVVRSHDYKNYRKIGEVEGIISKLSVSVEEGVSQDSIHSRQEIYGLNRYPEKPSKSLLMFVWDALHDLTLIILMVCAIVSIGIGLPTEGWPKGVYDGLGIILSVFLVVIVTAISDYQQSLQFRDLDKEKKKIFVQVTRDGKRQKISIYDLVVGDIVHLATGDQVPADGVYISGYSLLIDESSLSGESEPVNIDKQRPFLLSGTKVQDGQGKMVVTTVGMRTEWGKLMETLNEGGEDETPLQVKLHGVATIIGKIGLTFAVLTFVVLTIRFLVEKGVNGDFGSWSSNDALKLLDYFAIAVTIIVVAIPEGLPLAVTLSLAFAMKKLMNDRALVRHLSACETMGSASCICTDKTGTLTTNHMVVNKIWICEKTMEMKGNESADKLKTEISEEVLSILLQAIFQNTSSEVVKGKDGNKTILGTPTESALLEFGLLSGGDFDAQRKTCEVLMVEPFNSSRKKMSVLVELPDGGGVRAFCKGASEIVLKMCDKIIDSNGTAVDLPEELANKVSDVINGFASEALRTLCLAVKDINENQGEKSIPDNGYTLIAIVGIKDPVRPGVREAVQTCLAAGITVRMVTGDNINTARAIAKECGILTEDGVAIEGPAFRDLSPEQMKDVIPRIQVMARSLPLDKHTLVTNLRNMFGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFTTIVNVAKWGRAIYINIQKFVQFQLTVNVVALVINFVSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLMERLPVGRTTSFITKPMWRNIFGQSLYQLIVLAILNFDGKRLLGLTGSDATIMLNTLIFNSFVFCQVFNEINSREIERINIFRGMFDSWIFFTVIFSTVVFQVIIVEFLGTFASTVPLNWQFWLLSVVIGAVSMPIAAILKCIPVEKDTTKHHDGYEALPSGPELA | 1033 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sebi637g00017 | 1033 | SUPERFAMILY | Calcium ATPase, transduction domain A | 234 | 330 | IPR008250 | - | |
| Sebi637g00017 | 1033 | PRINTS | P-type cation-transporting ATPase superfamily signature | 751 | 770 | - | - | |
| Sebi637g00017 | 1033 | PRINTS | P-type cation-transporting ATPase superfamily signature | 648 | 659 | - | - | |
| Sebi637g00017 | 1033 | PRINTS | P-type cation-transporting ATPase superfamily signature | 280 | 294 | - | - | |
| Sebi637g00017 | 1033 | PRINTS | P-type cation-transporting ATPase superfamily signature | 775 | 787 | - | - | |
| Sebi637g00017 | 1033 | PRINTS | P-type cation-transporting ATPase superfamily signature | 670 | 680 | - | - | |
| Sebi637g00017 | 1033 | PRINTS | P-type cation-transporting ATPase superfamily signature | 449 | 463 | - | - | |
| Sebi637g00017 | 1033 | FunFam | Calcium-transporting ATPase | 459 | 655 | - | - | |
| Sebi637g00017 | 1033 | Pfam | Cation transporter/ATPase, N-terminus | 116 | 181 | IPR004014 | - | |
| Sebi637g00017 | 1033 | PANTHER | CATION TRANSPORTING ATPASE | 85 | 1012 | - | - | |
| Sebi637g00017 | 1033 | FunFam | Calcium-transporting ATPase | 15 | 75 | - | - | |
| Sebi637g00017 | 1033 | FunFam | Calcium-transporting ATPase | 211 | 332 | - | - | |
| Sebi637g00017 | 1033 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 5 | 47 | IPR024750 | GO:0005516 | |
| Sebi637g00017 | 1033 | SMART | Cation_ATPase_N_a_2 | 112 | 186 | IPR004014 | - | |
| Sebi637g00017 | 1033 | FunFam | Calcium-transporting ATPase | 768 | 1014 | - | - | |
| Sebi637g00017 | 1033 | Pfam | Cation transport ATPase (P-type) | 506 | 590 | - | - | |
| Sebi637g00017 | 1033 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 451 | 457 | IPR018303 | - | |
| Sebi637g00017 | 1033 | Gene3D | - | 15 | 76 | - | - | |
| Sebi637g00017 | 1033 | Pfam | E1-E2 ATPase | 234 | 427 | - | - | |
| Sebi637g00017 | 1033 | Gene3D | - | 132 | 332 | - | - | |
| Sebi637g00017 | 1033 | Gene3D | - | 459 | 655 | IPR023299 | GO:0000166 | |
| Sebi637g00017 | 1033 | SFLD | p-type atpase | 431 | 804 | IPR044492 | - | |
| Sebi637g00017 | 1033 | CDD | P-type_ATPase_Ca_PMCA-like | 141 | 884 | - | - | |
| Sebi637g00017 | 1033 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 106 | 1013 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 | |
| Sebi637g00017 | 1033 | SUPERFAMILY | HAD-like | 448 | 856 | IPR036412 | - | |
| Sebi637g00017 | 1033 | FunFam | Calcium-transporting ATPase | 648 | 796 | - | - | |
| Sebi637g00017 | 1033 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 455 | 660 | IPR023299 | GO:0000166 | |
| Sebi637g00017 | 1033 | PRINTS | H+-transporting ATPase (proton pump) signature | 608 | 626 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Sebi637g00017 | 1033 | PRINTS | H+-transporting ATPase (proton pump) signature | 783 | 808 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Sebi637g00017 | 1033 | PRINTS | H+-transporting ATPase (proton pump) signature | 751 | 767 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Sebi637g00017 | 1033 | Pfam | Cation transporting ATPase, C-terminus | 836 | 1009 | IPR006068 | - | |
| Sebi637g00017 | 1033 | SFLD | C1.7: P-type atpase like | 431 | 804 | - | - | |
| Sebi637g00017 | 1033 | NCBIfam | HAD-IC family P-type ATPase | 546 | 696 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Sebi637g00017 | 1033 | NCBIfam | HAD-IC family P-type ATPase | 389 | 514 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Sebi637g00017 | 1033 | NCBIfam | HAD-IC family P-type ATPase | 718 | 839 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Sebi637g00017 | 1033 | NCBIfam | HAD-IC family P-type ATPase | 201 | 371 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Sebi637g00017 | 1033 | Gene3D | - | 164 | 1010 | - | - | |
| Sebi637g00017 | 1033 | Gene3D | - | 446 | 796 | IPR023214 | - | |
| Sebi637g00017 | 1033 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 116 | 1012 | IPR023298 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sebi637g00017 | Sebi-Chr637 | 438164 | 447051 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sebi637g00017 | 59 | 1030 | Primary Pumps ATPases | AT3G57330 | 73.148 | 0.0 | 1473 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sebi637g00017 | K01537 | - | gmx:100791934 | 1694.86 |