Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi637g00016 ATGATGGAACAAACTGAAACTAACAATACTGCTGCTGTTGATCCCAAAAATTCTAAATCCCCCAATAAAGATAATTTGGATTCTCATCAGATTCCTGAAGGTTACAAAAGGATAAGTGAACTAACAGATGAGGATATCAGAGGGCTTGAGTTTGATACAGAAGAGGATGCATATGATTTCTACTGTGAGTATGCTAAATTCATAGGATTTTCTGTTAGGAAAGGTGATGTCTATAGAAATTGTAATGGTTCAATTACAATGAGGCAATTGGTTTGTAATAGAGAGGGAGAGAGAAGTGAGAAGCATCTTAATAGGACTGATAGGCTTAGGGAGGCAAAGGCCTTGACCCGAACTAAGTGTAATGCAAGGCTCCGTGTTTCTTTAGATTATAGAATTAGAAAGTGGAGGGTTGGAATCTTTGAGCCAGCTCACAACCATGAATTGACTCCTGCAAGTATGATACATTTGCTACCTGCTTATCGTGGGTTGAGTGTAGCTGATAAGGCACAAGTTGACGGTCTACATCATTATGGTGTTAAGACTTGTCATATAATGGGTCTTATAATGGGTCAAAAGGGAGGCTATTTTGATCTTGGTTTTTCAATGTTCAATAAAGTTCCTAAGGTTGTGGTTACTGTTGGAGATGGTGCAATGCGTGAAGCTATCAGATCTGTTTTTCCTGGTGCTCTTCACAGTCGTCAGAAGTTTGAGGATGAGTGGAACAAGGTTGTTGACAAACATGGTTTGAGGGAAAGTAGGTATGTTCAGAGCGAAAATAGTCTTGTTGATTTTCTTTACAATTTTGAGAGAGCTCTCAATGAATATAGAAACAATGAGTTAACTTCAGATTTCAAGTCGAAATACACGCAACCTGTGATGACTACTGCGTTGAAAAGATATGAAGTTCAAGCTTCAAATGTCTACACGAGGAATAAGTTTTTTGATGTTCGAAAGCAAATTGAGAAATTTGTTGCCATAAATGTGATTGAGAGGACATATGTTGGTAATGTTGTTACAATAAAGATGAATAAATTCGGAACTCCTGATTCTACTTATATTGTTATGTTGGATAAGTCTAATGGTAATTTGGTTTGTGATTGTCGCATGTTTGAATCATGTGGCATCCCATGTTCACACATTTTCAGTGCAATGAAGCATGAGCAAGTGGAATCAATTCCTGCATCTTTGATTTCCAAAAGGTGGACGAAGTTGGCTAAAGTTGAGCACATTTCTTCTGTTTATGCTGAAGAAGGTGACACATCAAAGAAAGACTTATTGAGGTCTGGTGTTGTTGGTGCTGCATGTAACAAGCTTAACAAGACTGCCCGCCACACAGTTAGGACATGCACTAAATATGCTACTCGTGATCAGTTAGATACAGTTCTTGAAGAAGAATCATCTGTTGAGACTGACGAAGATTCAAGAGATGAAAGTAGGTCACGAGATGTTCATTTTTCTAACCATTTGAATGATGTAACAATCTCTGCTGGTCATAATTGTGCTTCAGACAAGTTTACTAATGCTGTGAACAACGTTGAAAGGAATAATGGGGTGGGAAGGAAGAAGGAAGAGTTTTGGATATATATGAAGAGATAA 1596 0.3791 MMEQTETNNTAAVDPKNSKSPNKDNLDSHQIPEGYKRISELTDEDIRGLEFDTEEDAYDFYCEYAKFIGFSVRKGDVYRNCNGSITMRQLVCNREGERSEKHLNRTDRLREAKALTRTKCNARLRVSLDYRIRKWRVGIFEPAHNHELTPASMIHLLPAYRGLSVADKAQVDGLHHYGVKTCHIMGLIMGQKGGYFDLGFSMFNKVPKVVVTVGDGAMREAIRSVFPGALHSRQKFEDEWNKVVDKHGLRESRYVQSENSLVDFLYNFERALNEYRNNELTSDFKSKYTQPVMTTALKRYEVQASNVYTRNKFFDVRKQIEKFVAINVIERTYVGNVVTIKMNKFGTPDSTYIVMLDKSNGNLVCDCRMFESCGIPCSHIFSAMKHEQVESIPASLISKRWTKLAKVEHISSVYAEEGDTSKKDLLRSGVVGAACNKLNKTARHTVRTCTKYATRDQLDTVLEEESSVETDEDSRDESRSRDVHFSNHLNDVTISAGHNCASDKFTNAVNNVERNNGVGRKKEEFWIYMKR 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi637g00016 531 SMART 26again6 363 390 IPR006564 GO:0008270
Sebi637g00016 531 ProSiteProfiles Zinc finger SWIM-type profile. 352 388 IPR007527 GO:0008270
Sebi637g00016 531 PANTHER OS01G0519700 PROTEIN 233 408 - -
Sebi637g00016 531 MobiDBLite consensus disorder prediction 1 27 - -
Sebi637g00016 531 MobiDBLite consensus disorder prediction 462 484 - -
Sebi637g00016 531 MobiDBLite consensus disorder prediction 1 34 - -
Sebi637g00016 531 Pfam SWIM zinc finger 353 380 IPR007527 GO:0008270
Sebi637g00016 531 Pfam FAR1 DNA-binding domain 59 149 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi637g00016 Sebi-Chr637 379420 382718 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi637g00016 FAR1 1.9e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi637g00016 - - aip:107640898 257.299