LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi636g00019	ATGCCTGCAATCGCCGCCAAGCGCAGATTAAGATCTCACGCATCGCCCCTCCCCGCTCCTTCCACGCCCAGCCGTAAATCTCCCCGCCGATGCACCGCCGCAACCCCTAATTCCTCCATTACTGAAAACATAGTTATCACCGATGGAAACAAAGCCGAATCGCTTGAACCCGCGGCAGTGAATCTCCGATGGAATCCCAAAGATGGCGAACAATTGAGGATGGTGAAGGAGGCATTGCACTTGTCCACTGCACCGTCTTCTGTTGTGTGCCGTGAGGAGGAGCAGAATGTGGTTTTGGAGTTCTGCAAGGGATGCGTTGAGCACGAGAAGGCTGGGAGTCTCTACATATGTGGCTGTCCCGGAACTGGGAAATCGTTGTCTATGGAGAAAGTGAAAGAGCTTTTGCTCAACTGGGCTACAGAGGCAGGTTTCCCGCTACCAGATGTTTTATCTGTAAATTGTACATCCCTTGCCAATACTTCTGATATTTTCACTAAGATACTTGGAGTAGACCAAACACGGGGAAAAAAGGTTTCCACCACACCCTTACAGCAACTTCAGAACATGTATTCTCACAAATCGTCTAGCAAGAACATGTTATTGATAGTAGCTGATGAATTAGATTATCTAATAACCAAAAACAGAGCTGTGCTCCATGATCTTTTCATGCTTACCACTTTCCCATTTTCCAGATGTATATTAATAGGTGTAGCAAATTCAATTGACCTAGCTGATCGATTTCTTCCAAGGCTTACATCATTAAATTGCAAGCCTATTGTTGTAACTTTCCGGGCATACACTAAAGATCAGATCCTTAGGATTCTCGAAGAAAGGCTAAATGGACTTCCTTACACTGTCTTCCAACACCAAGCGCTGGAACTATGTGCTAGGAAAGTTGCTGCAGCTTCTGGAGATATGCGAAATGCTCTTTGTATATGCAGGAGTGCAATAGAGATGCTAGAAGCTGAAATTAGAGAATCTGCCTCCAATTTGTATACTTCATTGGAAGAGAAATCATCCTCCAGGCAAAATCTTGCTACAGCTTCTGAGTTCGTAAAAAAACAAGAATTTGATATTGTAAGGATTGATCATATGGCTCTTGCCTTGTCGAAAACATATAGGTCACCTGTGGTGGATACAATACAATCCCTGCCACATCATCAACAGATTATACTCTGCTCTTCTATGAAACATTTCCGTGGAGCCAAGAAAGATGCAATCCTCGGGGAGTTGTATAAATCTTACACGGAGATATGCAAATCATCACTAATCCCCCCTGTGGGAATCTTAGAATTTTCAAACATGTGCACAGTGCTGAATGACCAGGGGCTTATCAAACTAGGACAATCCCGAGAGGATAACTTGAGAAGAGTGACACCTAAAGTAGATGAGGGTGATATTACTTTTGCATTGCAGGTGGGTTCGTTTGGCTCAGACTGGCGTCTTCACTAG	1452	0.4421	MPAIAAKRRLRSHASPLPAPSTPSRKSPRRCTAATPNSSITENIVITDGNKAESLEPAAVNLRWNPKDGEQLRMVKEALHLSTAPSSVVCREEEQNVVLEFCKGCVEHEKAGSLYICGCPGTGKSLSMEKVKELLLNWATEAGFPLPDVLSVNCTSLANTSDIFTKILGVDQTRGKKVSTTPLQQLQNMYSHKSSSKNMLLIVADELDYLITKNRAVLHDLFMLTTFPFSRCILIGVANSIDLADRFLPRLTSLNCKPIVVTFRAYTKDQILRILEERLNGLPYTVFQHQALELCARKVAAASGDMRNALCICRSAIEMLEAEIRESASNLYTSLEEKSSSRQNLATASEFVKKQEFDIVRIDHMALALSKTYRSPVVDTIQSLPHHQQIILCSSMKHFRGAKKDAILGELYKSYTEICKSSLIPPVGILEFSNMCTVLNDQGLIKLGQSREDNLRRVTPKVDEGDITFALQVGSFGSDWRLH	483

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi636g00019	483	Gene3D	-	68	256	IPR027417	-
	Sebi636g00019	483	SMART	Cdc6_C_2	392	471	IPR015163	-
	Sebi636g00019	483	FunFam	Cell division control protein	69	254	-	-
	Sebi636g00019	483	Pfam	AAA domain	109	226	IPR003593	GO:0016887
	Sebi636g00019	483	Gene3D	-	381	467	IPR036388	-
	Sebi636g00019	483	PANTHER	CELL DIVISION CONTROL PROTEIN 6-RELATED	29	472	-	-
	Sebi636g00019	483	MobiDBLite	consensus disorder prediction	1	34	-	-
	Sebi636g00019	483	Pfam	AAA lid domain	288	322	IPR041083	-
	Sebi636g00019	483	CDD	AAA	94	253	-	-
	Sebi636g00019	483	CDD	Cdc6_C	385	467	IPR015163	-
	Sebi636g00019	483	Gene3D	-	257	380	-	-
	Sebi636g00019	483	PIRSF	Cdc6	5	476	IPR016314	GO:0006270\|GO:0051301
	Sebi636g00019	483	FunFam	Cell division control protein	384	473	-	-
	Sebi636g00019	483	Pfam	CDC6, C terminal winged helix domain	392	470	IPR015163	-
	Sebi636g00019	483	FunFam	Cell division control protein	255	381	-	-
	Sebi636g00019	483	SUPERFAMILY	"Winged helix" DNA-binding domain	377	472	IPR036390	-
	Sebi636g00019	483	MobiDBLite	consensus disorder prediction	17	34	-	-
	Sebi636g00019	483	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	78	326	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi636g00019	Sebi-Chr636	529859	535670	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi636g00019	16	472	Core DNA Replication Machinery Family	AT2G29680	59.829	0.0	553

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi636g00019	K02213		-	gmx:100791200	771.155