Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi636g00003 ATGAAGTGGGAAATGGAAATCCTCCCTCCTGCACCATATATTCACAACTCCAACAGCACCAATTGGTTTCTTGAAGATAACAGGAACACCAAATGGACTCCTGCAGAGAACAAGCTGTTTGAAAATGCTCTTGCAGTGTATGATAAGGACACCCCGGATCGGTGGCACAAAGTTGCTGAAATGATACCAGGAAAGACAGTTATGGATGTGATGAAGCAGTACAAGGAGTTAGAAGCAGATGTTAGTAACATAGAAGCTGGTTTGATCCCAATTCCTGGCTACAGTACCACCACCTCACCCTTCACCTTAGATTGGGTCAACACTCCTGGCTATGATGGCTTTAAAGGACTCACTGCAAAGAGATCCTCCTCAGGCAGAACCCCTGATCAGGAAAGGAAGAAAGGTGTGCCATGGACTGAAGAGGAACACAAATTGTTTCTACTGGGTCTGAAAAAGTATGGCAAAGGTGATTGGAGGAATATATCACGTAATTTTGTGATTACTAGAACCCCAACTCAGGTGGCTAGCCATGCTCAAAAGTACTTCATAAGGCAACTTTCAGGAGGCAAAGACAAGAGAAGAGCTAGCATTCATGACATAACAACTGTTAATCTCACAGAACCAACAAGAACTTCTCTTTCAGAAGACAACAAGAGATCCACTTCACCACAGCATTCCTTGATGCTCTCTGGCCAGCTCCCAGATTCTACTGGGTTGCATTTTCAGTGGAATAATAATAATCAGCCAAATGCAGTAGCAACAACTATGGCTCCTAATCTTGCAAATGAACAAGTATTCATGACTCCTTATGGGGTTAATTCCTTTGGTTTTAAAATGCAGGGCCAAAATCTTCACAGAAGTCCTCTTCATGGGTCTTCTTACTTAGGACCTCAGACACAAAACATGGTTTTCCAAATGCAATCCTCTCAACACTATTCCCATGCATGA 948 0.4293 MKWEMEILPPAPYIHNSNSTNWFLEDNRNTKWTPAENKLFENALAVYDKDTPDRWHKVAEMIPGKTVMDVMKQYKELEADVSNIEAGLIPIPGYSTTTSPFTLDWVNTPGYDGFKGLTAKRSSSGRTPDQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTEPTRTSLSEDNKRSTSPQHSLMLSGQLPDSTGLHFQWNNNNQPNAVATTMAPNLANEQVFMTPYGVNSFGFKMQGQNLHRSPLHGSSYLGPQTQNMVFQMQSSQHYSHA 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi636g00003 315 SMART sant 28 80 IPR001005 -
Sebi636g00003 315 SMART sant 134 184 IPR001005 -
Sebi636g00003 315 CDD SANT 137 182 IPR001005 -
Sebi636g00003 315 FunFam Transcription factor SRM1 24 91 - -
Sebi636g00003 315 Gene3D - 25 91 - -
Sebi636g00003 315 MobiDBLite consensus disorder prediction 207 231 - -
Sebi636g00003 315 ProSiteProfiles Myb-like domain profile. 130 182 IPR001005 -
Sebi636g00003 315 ProSiteProfiles SANT domain profile. 138 186 IPR017884 -
Sebi636g00003 315 Pfam Myb-like DNA-binding domain 137 182 IPR001005 -
Sebi636g00003 315 Pfam Myb-like DNA-binding domain 31 75 IPR001005 -
Sebi636g00003 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 130 186 IPR017930 -
Sebi636g00003 315 SUPERFAMILY Homeodomain-like 30 85 IPR009057 -
Sebi636g00003 315 FunFam transcription factor MYB1R1 136 187 - -
Sebi636g00003 315 Gene3D - 136 186 - -
Sebi636g00003 315 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 26 264 IPR043363 -
Sebi636g00003 315 NCBIfam myb-like DNA-binding domain, SHAQKYF class 133 185 IPR006447 GO:0003677
Sebi636g00003 315 CDD SANT 31 77 IPR001005 -
Sebi636g00003 315 SUPERFAMILY Homeodomain-like 132 185 IPR009057 -
Sebi636g00003 315 ProSiteProfiles Myb-like domain profile. 24 78 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi636g00003 Sebi-Chr636 97581 98870 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi636g00003 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi636g00003 - - gmx:100784163 499.204