Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi633g00007 ATGGCTGAGGGTTTTGAACATTTCCATATCCCACAACAAAGCAGAAGAGATAAGTTAAGAGTTTTGGGTCAGACCCAAACGGGTTTTGTTGAATCTTCCCATAATACCCTTCATCCTGGTTGTGCAACTTTACCTTCTCTCTATGATCCTTCTCTGATTTCCTCTGATTTGTTAGCTTGTGCTAACCAACAAGGTCACGGCTTTCATAGTAACCACAATAACGTTAACGTTAACCCTCTTTCTGCTACCAACAACGAACCTTGTAAAGCAAACCAAGGTTATGCCTCGGTATTGAAAGGATCGAGGTTCTTGAAGCCTGCACAACAATTATTGGAAGAGCTATGTGATGTTGGGATTCGTGGAGTTTATGGTGAGAAAATCGCTGCTGATGCATCTTTAATGGAAACTCCTTCAGAGAGTTTAAGTGCTAGTGGAATTGGTGTGGATGATCCACTTATTGGAGATGGGAATCATGAGGGTAGCAAGAAGAAGTCCAGGTTATTAACCATGCTTGATGAGGTTTACAGGAGGTACAGGCAATACTATCAACAGATCCATGCAGTAGTAACTTCATTTGAGTATGTTGCTGGCCTTGGTAATGCAGCCCCATATGCAAGTTTGGCTATAAATGCCATGTCCAAACATTTTAGATACTTAAAGAATGCAATTACTGACCAGCTTCAGTTTATCAGTAAGGCTCATTTTCAGATAAGCAATAATAGGAAGGATGAATCTCCAAGGTTTCACAACACCGATAGAGGCCCTTACAGCCAAAGGCCAGGCTTTCTAGAGCACCAACAACCTGTTTGGCGACCTCAAAGAGGACTCCCTGAGCGTGCCGTGAGCGTCCTCCGGGCATGGTTGTTTGAACACTTCCTCCACCCTTATCCTACTGATACGGATAAGCTAATGTTGGCTAAACAAACTGGTTTATCTCGTAACCAGGTGTCTAATTGGTTTATCAATGCAAGAGTAAGGCTTTGGAAACCAATGGTGGAGGAAATACACATGCTTGAATCACAACAAGCTCAAAATAAATCACAAAGGGAAGAACATAGTAGGAACAATTTGAGTGATCATTTACCTTCAGATAACATTCCTGAGAATCCATCTACCACAATGGATAAGTTTCAGGATGTAACTTACAGACGCAGTAGAAATGAACTTCCTAATATGCAAGTGAGGAATCAAGAACAACAACTGAATCAGACTAACACAAGCAACCAACAAGTGAGTGCAGTTGGAGTGAGCATGGGGAATGGTGCAAGCAATGGTGTTTCTCTAACACTCGGTCTTCATCAAAATCATGGAATTGGGTTATCTGAACCCTTTGGCATGAGTGCAGCACATCGTTTTGGTCTTGCTCTTCAACCTCATGAGGGCTATGTTACAAATGGCTTTGAATCACAAAATCGACATTTTGGAAGAGATGTTATAGGAGGGCAACTTTTGCATGACTTTGTAGGCTGA 1470 0.419 MAEGFEHFHIPQQSRRDKLRVLGQTQTGFVESSHNTLHPGCATLPSLYDPSLISSDLLACANQQGHGFHSNHNNVNVNPLSATNNEPCKANQGYASVLKGSRFLKPAQQLLEELCDVGIRGVYGEKIAADASLMETPSESLSASGIGVDDPLIGDGNHEGSKKKSRLLTMLDEVYRRYRQYYQQIHAVVTSFEYVAGLGNAAPYASLAINAMSKHFRYLKNAITDQLQFISKAHFQISNNRKDESPRFHNTDRGPYSQRPGFLEHQQPVWRPQRGLPERAVSVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRLWKPMVEEIHMLESQQAQNKSQREEHSRNNLSDHLPSDNIPENPSTTMDKFQDVTYRRSRNELPNMQVRNQEQQLNQTNTSNQQVSAVGVSMGNGASNGVSLTLGLHQNHGIGLSEPFGMSAAHRFGLALQPHEGYVTNGFESQNRHFGRDVIGGQLLHDFVG 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi633g00007 489 SMART HOX_1 270 334 IPR001356 GO:0003677
Sebi633g00007 489 CDD homeodomain 270 331 IPR001356 GO:0003677
Sebi633g00007 489 MobiDBLite consensus disorder prediction 242 261 - -
Sebi633g00007 489 Pfam Associated with HOX 97 224 IPR006563 -
Sebi633g00007 489 SMART prehox3 92 225 IPR006563 -
Sebi633g00007 489 MobiDBLite consensus disorder prediction 339 377 - -
Sebi633g00007 489 Gene3D - 273 335 - -
Sebi633g00007 489 SUPERFAMILY Homeodomain-like 272 337 IPR009057 -
Sebi633g00007 489 ProSiteProfiles 'Homeobox' domain profile. 267 330 IPR001356 GO:0003677
Sebi633g00007 489 MobiDBLite consensus disorder prediction 359 377 - -
Sebi633g00007 489 Pfam Homeobox KN domain 287 326 IPR008422 GO:0003677|GO:0006355
Sebi633g00007 489 FunFam BEL1-like homeodomain protein 9 273 335 - -
Sebi633g00007 489 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 68 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi633g00007 Sebi-Chr633 167924 172401 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi633g00007 80 489 Homeobox Transcription Factor Family AT5G02030 49.095 1.72e-110 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Sebi633g00007 POX 4.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi633g00007 - - gmx:100790713 590.112