Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi631g00048 ATGAGTACTGTTGGATACAGGTCAGATGAGGAATGCTCTGTCATAGGAGGAAAAGCTGAAATCGGGTTTCTAGATTTTGAGGAAGAAAAATCTGTTTGCAGTTATGTTGGTGATGAAGGGGCTCCAGTTATTGTATCTGTCCCATTTGCATTTGTAGATGGGAAGCCTCGATCAGTACTTGTTGGAGATACTGCTGTGGATTTAATAACCATTAATAATACTACTGATGAACCTGTGGACCTGTGGAGTGTCAATATTTTTGCCTCAAATCCTCAGGACTCTTTCACTCTTTCTCTCATGGAACCTCCATTAGCAAATTCAAATGCAGATACAGTTGACAGCTTTTTAGAATCTTTCTCTTTGGAGGACAGGATGCTGCAGCCTGGCGAGGTCTTAAGAATATGGTTGTCTTGCAAGACAAAAGAAATTGGCATGTACTCATCAGTTGTGTATTTTGATGTTGGAGATGAAAAAATAGAAAGAGTGGTTTTCCTCTTAGTTGAAGACAAGATCTCAAAATCTTTGGCTCCTAACAGACCTTATTCAAAAGGAAGGAGAAAAGACAAATTTGTTGTAGATAATTATGTTTCTGGCTCACGTCCAGCAGGGAAGACATATCGAAGATATGTAAATAGACTTCCAAGATATGACATTCCCCGGGACGTTAGACACCTGCTTGAGAGCAACCAAGTCCCTCAGATTATTGAAGAAGGTCTTACAAGAAAGAGTTATGCTTCTTATTTCAAAACATTAATAATAATGGAAGAGATACAATTGGAGGAAGACATGAGGACTTATGACATGGAATGCATAACCATGAGAAAGAGAGCCAATCAGTTTTTGTCCTTGGAGGTTCCTGGGCTTGCTGAGAGAAGGCCATCACTGGTTCATGGGGATTATATCTTTGCCAAGCGGGCATCTGAACATGATAAAAACACCACACCCGTTTATCAGGGATTTATCCACCGGGTTGAAGCTGATGAGGTCTATTTGAAATTTGATCCTGAATTTCACTTTTACCATAGAGATGAAAATCTCTATAATGTTCACTTCACGTATAATAGAATCAATATGAGAAGGTTATATCAAGCAATTGAGGCAGCAGAGAACTTAGGAACTGAGTTCCTTTTTCCATCTACATCATCCAGAAGGAGGTCCATTAAAACCACTGCTCTGGTTCCCATATCTGGTACTTATAATGAGCAGCAAGAGTGTTCAATCAAAATGATTTTGGGTTGCAAAGGCGCACCACCTTATGTGATTCATGGGCCTCCAGGTACGGGAAAGACTAGGACAATAGTAGAAGCAGTCCTCCAGCTGTACACACATCATAAGAATGCTCGTATTCTTATCTGTGCACCCTCAAATAGTGCAGCAGACCACATACTGGAGAAACTCCTTGTTCAACAGGATGTTGAATTTCATGAAAATGAAATATTCAGGCTCAATGCGTCTACCAGGCCATATGAGGATGTCAAACCTGAACTAATCCGTTTCTGCTTCTTTGATGAGTTGATATTTAAGTGTCCCCCACACAGTGCCCTCAATCATTATAGGATCATAGTATCCACATATATGAGTGCTTCTCTTCTTTATGCAGAAGATGTTGCCCGCGGTCACTTCTCTCACATTTTCTTGGATGAGGCTGGCCAAGCTTCAGAACCTGAAACCTTGATCCCTATATCCCATCTCTGCAGAAAGGAAACTGTTGTTGTTCTGGCTGGAGACCCATTGCAGTTGGGTCCAGTAATATATTCCAAGACAGCAGATGAGTTTGGATTGGGGATTTCATACATGGAACGATTGTTTGAATGTGAATTATATTCCAGTGGGGATGTCAATTATGTAACAAAATTGATTAGAAATTATCGATGTCACCCAGAGATTTTATATCTCCCTTCAAAGCTGTTCTATGACGGGGAATTAATGGCATGTAGAGATTCCACAACTTTCATGGTGACTCCAGAGTTCCTCCCTAACAAGGAGTTCCCTATTCTTTTCTTTGGCATCCAAGGATGTGATGAAAGAGAAGGGAATAACCCATCATGGTTCAACCGAATTGAAGCAAGTAAGGTTGTAGAAGTTGTCAGGAGACTGATAGCTGGTGGGAATATAAGAGAGCATGATATTGGCATAATAACACCATATAGGCAGCAAGTGTTGAAAATAAGACAGACACTTGAAAATCTAGATATGCCTGATATCAAAGTTGGTAGTGTTGAGCAATTTCAAGGACAAGAAAAGGAGGTTATTATCATATCAACTGTTCGATCAACCATCAAACACAATGAATTTGACAGAGTCTACTGTCTTGGTTTTTTGAGCAATTATAGAAGGTTTAATGTGGCTTTAACCCGTGCTATATCGTTGCTGGTTATAATTGGGAACCCCCATATTATCTGCAAGGGTTCTTCTCTTCCGGAAAGGCTGGAACCTTGTGATGATGAGGACACTAGAGAGAACTCCTGCTTAGGCTTTAATGAAGATAATGTGTTAGCCTCTAACAATGGAGAATGGGATCAAGATTCATCCCAGACAGAGTTCCCTAAACCTGTGACCGATGAAGCTGAGTGGTCTGATGGCTGGAGAAGCAATTAA 2598 0.4049 MSTVGYRSDEECSVIGGKAEIGFLDFEEEKSVCSYVGDEGAPVIVSVPFAFVDGKPRSVLVGDTAVDLITINNTTDEPVDLWSVNIFASNPQDSFTLSLMEPPLANSNADTVDSFLESFSLEDRMLQPGEVLRIWLSCKTKEIGMYSSVVYFDVGDEKIERVVFLLVEDKISKSLAPNRPYSKGRRKDKFVVDNYVSGSRPAGKTYRRYVNRLPRYDIPRDVRHLLESNQVPQIIEEGLTRKSYASYFKTLIIMEEIQLEEDMRTYDMECITMRKRANQFLSLEVPGLAERRPSLVHGDYIFAKRASEHDKNTTPVYQGFIHRVEADEVYLKFDPEFHFYHRDENLYNVHFTYNRINMRRLYQAIEAAENLGTEFLFPSTSSRRRSIKTTALVPISGTYNEQQECSIKMILGCKGAPPYVIHGPPGTGKTRTIVEAVLQLYTHHKNARILICAPSNSAADHILEKLLVQQDVEFHENEIFRLNASTRPYEDVKPELIRFCFFDELIFKCPPHSALNHYRIIVSTYMSASLLYAEDVARGHFSHIFLDEAGQASEPETLIPISHLCRKETVVVLAGDPLQLGPVIYSKTADEFGLGISYMERLFECELYSSGDVNYVTKLIRNYRCHPEILYLPSKLFYDGELMACRDSTTFMVTPEFLPNKEFPILFFGIQGCDEREGNNPSWFNRIEASKVVEVVRRLIAGGNIREHDIGIITPYRQQVLKIRQTLENLDMPDIKVGSVEQFQGQEKEVIIISTVRSTIKHNEFDRVYCLGFLSNYRRFNVALTRAISLLVIIGNPHIICKGSSLPERLEPCDDEDTRENSCLGFNEDNVLASNNGEWDQDSSQTEFPKPVTDEAEWSDGWRSN 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi631g00048 865 Pfam AAA domain 596 797 IPR041679 -
Sebi631g00048 865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 398 801 IPR027417 -
Sebi631g00048 865 PANTHER CANCER/TESTIS ANTIGEN 55 111 382 - -
Sebi631g00048 865 MobiDBLite consensus disorder prediction 834 850 - -
Sebi631g00048 865 FunFam Probable RNA helicase SDE3 348 493 - -
Sebi631g00048 865 Pfam AAA domain 513 587 IPR041677 GO:0004386
Sebi631g00048 865 Pfam AAA domain 399 494 IPR041677 GO:0004386
Sebi631g00048 865 CDD DEXXQc_Helz-like 400 624 IPR026122 GO:0003723|GO:0032574
Sebi631g00048 865 MobiDBLite consensus disorder prediction 834 865 - -
Sebi631g00048 865 CDD SF1_C_Upf1 625 802 IPR047187 -
Sebi631g00048 865 Gene3D - 624 823 IPR027417 -
Sebi631g00048 865 FunFam Mov10 RISC complex RNA helicase 624 824 - -
Sebi631g00048 865 Gene3D - 326 610 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi631g00048 Sebi-Chr631 538277 544007 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi631g00048 400 555 Core DNA Replication Machinery Family AT1G08840 27.673 4.18e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi631g00048 K18422 - gmx:100801796 1450.26