Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi631g00021 ATGGAACCGGGCATGAGATCAGGTGGCCCTTCTGGTTCTGGGGTTCTGATAAAGAGCAGGAATTCGTCAGGTTGTTTAATTGTCAGGAAAAAAGGGGATGGGTTGTGTTCTACCGCTACTGCCACTGCTGGGGTTGGTTCTTCCACCTCTCGGAAGATGTATGGATCCAAGAAAAGGCCCAACGTCAACATGTCCTTGAGTGATTCCGGATCAAGCGACGAGTTGCCGATGCCTCCTGCTAGAAGGCTCGGCCCTGAGACTATTCGAGTCTGTAATGGTTTGACTGCCTTTGAACGGGGTATGGTAGGGGGGAGTGAAATTAATAGGAAGAGGGATAGACTGGAACAAATTAGGGGTAATGGGGAAGGTATGATTGCGGAGAGTGGCTTGGACAAGGGGGAAAGGAAGCGCAATAAGCTGGGCGTGTTTGATTTCAATGAACATGAGAGTATGGATGTGGAGAAGATGAGAAGGAGGCATTTTGATAATAATGGAGTTGGTTTAGGAGGAGGCAGGTTTATGGGATCAGTACATATGGCTAGAAGTGGCATTGATAGGGAATTTGAGACAGGGTCAAGCAGGCACATTCTTGATAAGAGGAAGAACTTGTATCCTGACAGGCCGAGCGGCTTGTATCCAGGGGATAATGTTGATCACAGTAGGCTCAAGATGAACAGGGATGGAGATCAGTTGCCTCTACCCTTGTTGAGGGAGAAGTTTAATTCAGATAAACCCATTAGGGTTCAGGGGAAAAATGGTGTTTTGAAGGTAATGGTTAATAAGAAGAAGGTAGGTGGGCCATTAGAACACTATGCTCATTGCAAACCCGTGGACAGCAGGCAAAGGTTGAAGACTGAAGGGACTGCCAAGGGGAATGTTCTGATTCATCCTGCATCGTACTTTGAAGCAAAACCTTTTCAGAAATCAGGATTACTTGTTAGGCCAGAGAAGAAGCAGATAGCATCCAGAAAATCATTGTCAAGTAAGGATAGTAGGCGGGATGAGTATGATTCAGATAACAGTGACACATCGTTGAATCCAGGAATGAGAAATGTTGAAGCTCACAAACCTGCTAAGAGGATAATCTCTGAGGATGAACAGACTCCTGTGCATGAAAAGCTCCCACCTACAACATCGAAAGAAGGAAAAATCAAGCGTGGTAGTGGCACAGAAAAACAGAAACTGCGAGAAAGAATAAGGGAGATGCTCTTGAATGCAGGCTGGACCATAGACTACCGTCCTCGAAGGAATAGAGACTATCTGGATGCAGTTTACATTAATCCAGCAGGTACTGCCTATTGGTCTATCATCAAGGCCTATGATGCACTTCAAAAGCAATTGAATGATGATGTTAATGAGGCCAAGCCCAAAGGGGATAGTTCTTCCTTCGCTCCTATCGCAGATGAAGTGCTCAGTCAGTTGACAAGAAAAACTAAGAAGAAAATGGAGAAAGAATTAAAGAAGAAAAAAAAGAAGAAAATATATGATAGTGAAAGTGAAAGTGGAAAAGAGCCTCACATAAGAAAATCTGCCAGCAACAAGCATGATATGAATAGCGTGGATAGTGATAGCAATGAGGAGAAATTAAGCTCCTTTATAAAGCAGGGAAGTAAGTCAATGAAAAATAAAATGATTGAAAATACCAATGCTAGTGCTAGCTCTAAAAGCCAGAATGCTACCCATCACTCAAATGATGGAATGAAAAAATCATTCTCTGGATGTGATCCTCATATTCTACATGGACGCCAGAGTAGAAAACACGGGAGATGTACCTTGTTAGTTCGTAGTTCTACCAACGGATTAAATTCAGAATCTGATGGCTTTGTCCCGTATACGGGCAAACGGACAGTGCTTTCCTGGTTGATTGACTCTGGGTCAGTTGAGTTAAGCCAGAAGGTTCAATACCGTAGACGGAAGAAAGTACTGCTGGAGGGATGGATCACAAGAGACGGTATTCATTGTGGCTGCTGTAGTAAGATCCTTACAGTTTCAAAGTTTGAACTTCATGCAGGAAGCAAATTACCGCAGCCATATCAAAACATATTTTTGGAATCTGGAGTTTCTCTTTTACAGTGCCAGATAGATGCATGGAGTAGACAAGAGAATTCTGGGAAAATTGGTTTCCATTCAGTTGATATTGACGGTGATGATCCAAATGATGATACTTGTGGTATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCATCAACATTTCATCAGAGCTGCTTGGATATACAGATGCTTCCTCCTGGTGAATGGCATTGTCCAAATTGTACCTGTAAATTTTGTGGAATAGCCAGTGGAACTTCTAAGAAAGAAGTTGATGCAACTACGAAGGTCTTATGTACTTGCAACTTATGTGAGAAAAAATATCATTCCTCTTGTGCTAAGGAGATGGATGCCTTTCCTAATGACTTCAATACATCAGACCTTTCTTTTTGTGGGGAAGAGTGCAAAGAGCTTTTTGAGCACTTGAAGAAGTACCTTGGTACCAAAAATGAACTAGAAGCGGGCTTTTCATGGTCTCTTATTCACAGAACAAATGAAGACTCGGAGGCAGGTAGGGGAATTACCCAGAGGGTGGAATGTAATTCCAAGCTGGCTATTGCACTGACTGTGATGGATGAATGCTTTTTACCTGTTGTTGATCGGAGGAGTGGGATCAATATAATCCGTAATGTTTTATATAATAGTGGGTCAAACTTCAGTCGGTTGAATTATAGTGGATTTTACACTGCTATTTTAGAGAGAGGGGATGAAATCATTTCTGCAGCATCTATCAGGTTCCATGGAACTAAGTTGGCAGAGATGCCATTCATTGGGACTCGCAACATATACAGGCGCCAAGGGATGTGCCGCCGACTTTTTTCTGCCATTGAATCGGTCCTTTGCACTCTGAAGGTTGAAAAACTGGTTATTCCTGCAATTGCTGAACTCATGCATACATGGACAGCAGTTTTTGGCTTCACACATCTTGAGGAGTCACTCAGGCAAGAAATGAAGTCATTGAATTTATTGGTCTTCCCTGGCGTAGATATGTTACAGAAGCTATTTGTGGAGCAAGGAAAACATGAGGGCAGTGCAATTGCTGCAGGTTTGGAGAAACTGAAAAATGGGGATAATGTTTTTATTAAGACCAAATTGGCAAATAAGTCAGATATGGATTCCTCAACTCTGCAAGATTCTCATGGAAGTGATGATGCTAGTTCAAATCCTGCCAATGAGATGAATGATGAATGTAGTGATGCTTCTCAAGAACTTAACAACCAAGTTGCGGTTGACAGGACTATGTGTTCCAAATCTCGTTCGGAGGAAAGGTTATCTGATTCTGTTTCAGATAAATTTCCTTCCCCTAATAGGAGTGATGGTGCACCAGAAATGAAAAATAAAATAGCGATGGCTCCTGTTGATAAATTAAATCCTTGTTCTTCCATATGTCAGTCCGTTCCTCTGAATGGCTCTTCTATGAATTGTAATTCATCAGAGTTTGACATTAACCTAGTGTTGGATTCTCGAGTGGCCCACAATACTCTGCCTTCTGAAGAGGTTTACATGACTGATGCTCATGAGGTTCTTGAAGCTGTTCCTTCAGGGAATTTATCTGAAGAGAATATTACCAAGGAGAACAAGCAAAATGTAGATATCTCCGAATCTGTTCCTTCAGGGAATTTATCTGAAGAGAATATTACCAAGGAGAACAAGCAAAATGTAGATATCTCCGAATCTGTTCTCAATCATGCTGATGAGAGTTTGTTGCAAGATAGATCAGATTCCAATGGTGATATTGGATATGAGGGTGAGAAGAATTTACATTTGAACATAGGAGTTGCTTCAAATGAAATTTAA 3858 0.4184 MEPGMRSGGPSGSGVLIKSRNSSGCLIVRKKGDGLCSTATATAGVGSSTSRKMYGSKKRPNVNMSLSDSGSSDELPMPPARRLGPETIRVCNGLTAFERGMVGGSEINRKRDRLEQIRGNGEGMIAESGLDKGERKRNKLGVFDFNEHESMDVEKMRRRHFDNNGVGLGGGRFMGSVHMARSGIDREFETGSSRHILDKRKNLYPDRPSGLYPGDNVDHSRLKMNRDGDQLPLPLLREKFNSDKPIRVQGKNGVLKVMVNKKKVGGPLEHYAHCKPVDSRQRLKTEGTAKGNVLIHPASYFEAKPFQKSGLLVRPEKKQIASRKSLSSKDSRRDEYDSDNSDTSLNPGMRNVEAHKPAKRIISEDEQTPVHEKLPPTTSKEGKIKRGSGTEKQKLRERIREMLLNAGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYDALQKQLNDDVNEAKPKGDSSSFAPIADEVLSQLTRKTKKKMEKELKKKKKKKIYDSESESGKEPHIRKSASNKHDMNSVDSDSNEEKLSSFIKQGSKSMKNKMIENTNASASSKSQNATHHSNDGMKKSFSGCDPHILHGRQSRKHGRCTLLVRSSTNGLNSESDGFVPYTGKRTVLSWLIDSGSVELSQKVQYRRRKKVLLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPQPYQNIFLESGVSLLQCQIDAWSRQENSGKIGFHSVDIDGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGEWHCPNCTCKFCGIASGTSKKEVDATTKVLCTCNLCEKKYHSSCAKEMDAFPNDFNTSDLSFCGEECKELFEHLKKYLGTKNELEAGFSWSLIHRTNEDSEAGRGITQRVECNSKLAIALTVMDECFLPVVDRRSGINIIRNVLYNSGSNFSRLNYSGFYTAILERGDEIISAASIRFHGTKLAEMPFIGTRNIYRRQGMCRRLFSAIESVLCTLKVEKLVIPAIAELMHTWTAVFGFTHLEESLRQEMKSLNLLVFPGVDMLQKLFVEQGKHEGSAIAAGLEKLKNGDNVFIKTKLANKSDMDSSTLQDSHGSDDASSNPANEMNDECSDASQELNNQVAVDRTMCSKSRSEERLSDSVSDKFPSPNRSDGAPEMKNKIAMAPVDKLNPCSSICQSVPLNGSSMNCNSSEFDINLVLDSRVAHNTLPSEEVYMTDAHEVLEAVPSGNLSEENITKENKQNVDISESVPSGNLSEENITKENKQNVDISESVLNHADESLLQDRSDSNGDIGYEGEKNLHLNIGVASNEI 1285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi631g00021 1285 SUPERFAMILY FYVE/PHD zinc finger 712 768 IPR011011 -
Sebi631g00021 1285 MobiDBLite consensus disorder prediction 489 523 - -
Sebi631g00021 1285 SMART PHD_3 764 823 IPR001965 -
Sebi631g00021 1285 SMART PHD_3 722 763 IPR001965 -
Sebi631g00021 1285 Pfam Tify domain binding domain 645 695 IPR032308 -
Sebi631g00021 1285 MobiDBLite consensus disorder prediction 40 72 - -
Sebi631g00021 1285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 711 787 IPR013083 -
Sebi631g00021 1285 MobiDBLite consensus disorder prediction 314 393 - -
Sebi631g00021 1285 Pfam PHD-finger 723 765 IPR019787 -
Sebi631g00021 1285 MobiDBLite consensus disorder prediction 1100 1131 - -
Sebi631g00021 1285 MobiDBLite consensus disorder prediction 37 84 - -
Sebi631g00021 1285 MobiDBLite consensus disorder prediction 478 571 - -
Sebi631g00021 1285 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 912 996 IPR016181 -
Sebi631g00021 1285 MobiDBLite consensus disorder prediction 1215 1239 - -
Sebi631g00021 1285 MobiDBLite consensus disorder prediction 1058 1087 - -
Sebi631g00021 1285 CDD PHD2_CHD_II 723 762 - -
Sebi631g00021 1285 Coils Coil 472 492 - -
Sebi631g00021 1285 ProSitePatterns Zinc finger PHD-type signature. 723 762 IPR019786 -
Sebi631g00021 1285 MobiDBLite consensus disorder prediction 524 567 - -
Sebi631g00021 1285 ProSiteProfiles Zinc finger PHD-type profile. 720 765 IPR019787 -
Sebi631g00021 1285 MobiDBLite consensus disorder prediction 317 340 - -
Sebi631g00021 1285 MobiDBLite consensus disorder prediction 353 393 - -
Sebi631g00021 1285 PANTHER PHD FINGER PROTEIN 12 341 1122 IPR042163 GO:0003714|GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi631g00021 Sebi-Chr631 232193 281158 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi631g00021 1 1050 PHD Transcription Factor Family AT4G14920 49.859 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi631g00021 TDBD 5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi631g00021 - - gmx:100814247 1776.53