Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi631g00007 ATGGAGCAAGCACTGATTGGTGCCCTCAACTTGGTATCCCGCAACCTCCCTCTTCCTCCTGACCTCTTTAGCACCATTTCTTCTATCTATAACGGATCTGACCACAAACCGCTCCTTCTTGACTCCTCGGGGAATTATACTCAAGAAGATTTGTTGGCAGAACTTCACGATGCGCTGTTGAAACAACGTCCTAATTGTGCGTCCGGTGTCAAATTTAACAAAACATTGGAAAGCCGTTATCAAACTCAGATTCAGCGCCGCTTAACCGAACTTGAAGCTAGCAGAGTTGCAGAGGAAGAGGAGAAACAGAGGAATGATGGTGTCCAGGCATGGCATGGAAGGCAGAGACAACGTGCATCGCGGGCAGAGAAATTGAGATTCCAAGCCTTAAAGGCTGATGACCAGGAAGCTTACATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTGACTTTGCTTCTTGAAGAAACAAATAAACTGCTTGTTAATTTGGGAGCAGCTGTTCAACGTCAAAAGGACTCAAAACAATCAGACGGCATTGAACCCTTGGAAGATTCGGAACCTGGTTTACCACAGTCAGATGCTTTGAAGAGTGGAATTTCTAAAGAATCACGTCTTGAGGAAGATGTGGATTTGATAGATTCTGATCATAATGGTGACTCTAGTGATTTACTTGAAGGTCAGCGGCAGTACAATTCTGCCATACATTCAATTCAAGAAAAGGGTGTGACTGGTCCTCACTTGATTGTGGCTCCAAAGGCTGTTCTTCCAAATTGGATGCATGAATTCTCAACATGGGTTCCTAGGGCATCGATTGAAGAATCACGAGTGTGCTCTAGCAAGAACCCTGGACTCGGGAATAGTTTGCAGGAGTTGTGGTCGCTGCTTAATTTTCTACTTCCCAACATTTTCAATTCAGTTCAGAATTTCGAGGACTGGTTTAATGCTCCCTTTGCAGACCGAGTTGATGTCTCTCTAACAGATGAAGAACAGTTACTGATCATTCGGACGTCTTCATCAAGTAATAAGGCCTTCATATTAAGAAGGAAAAAGGATGAGGGTAGAAAAATATCTTCCTGGGAAATCTCAGGTTCAATACTCAAATGTGATATGTCTGCCTGGCAGAAAGTATATTATCACCAAGTCACTGACGTGGGCAGAGTTGGCTTGGACAATGGTTCTGGACAATCAAAAAGTCTACAAAACTTGACAATGCAACTCAGAAAGTGTTGTAACCATCCCTACCTCTTTGTGGGAGACTATGATATGTATAAACGTAAGGAGGAGATTGTTAGAGCATCAGGGAAATTTGAACTTCTTGACCGTTTGCTTCAAAAACTTCGCAGAGCTGACTTGATGGCTCTACAAAAACTGAGGAAAGAGGGTTCCCTACTACGGAAATTCAATGCTCCTGACTCTCCGTACTTTATGTTTCTCTTGAGCACTCGTGCTGGAGCCCAGGACAGAAGAGAGATGTTGGAGGAGATTATGCGTAGAGGTACTAGCTCACTTGGGACAGATGTGCCGAGGAGGCTGAAGGAGAATTACAGATCTCGTCTCATGGAAGAGCATGAGTTACCAGATTGGGTATACTCTGCACTAAATAAGGATGATAAGGTCAAGTTTTTTGACAGTGGTAGTGTTACTGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCAGATACGTTGAGCGATCTACAATGGATGAAGGCTGTGGAGAACGGACATGATATATCTAAGCTTTCAGTTAAAGGGAAAAGAAGATACCACCTCCCTGTGGACAGCCATGCACAAGCCAGTGATGACTTGGGGACAGAAGAAAGATTATTAGAATTAAGGAATGGAAGTGTTCCCATGGCCAATGAGAGATCAAGTGAAGACACATTCAATGTTACCCCTGCCTCTAAGAGGCTCAAGCATGAACAAATAAATACCCAGAAACATGAAAACGAGGATGTCGGAGTAAGTAGTTTGAACGAGCATATGTTTTCCTGGAATACTCACAGAAAGAAGAGATCAAACTATCTTGGGCAGGGTTCATTATCTGATACTAGAGGGCAGAATGCAAATGGAAAAGCAAACTGGAACTGA 2091 0.4314 MEQALIGALNLVSRNLPLPPDLFSTISSIYNGSDHKPLLLDSSGNYTQEDLLAELHDALLKQRPNCASGVKFNKTLESRYQTQIQRRLTELEASRVAEEEEKQRNDGVQAWHGRQRQRASRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDSKQSDGIEPLEDSEPGLPQSDALKSGISKESRLEEDVDLIDSDHNGDSSDLLEGQRQYNSAIHSIQEKGVTGPHLIVAPKAVLPNWMHEFSTWVPRASIEESRVCSSKNPGLGNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRTSSSSNKAFILRRKKDEGRKISSWEISGSILKCDMSAWQKVYYHQVTDVGRVGLDNGSGQSKSLQNLTMQLRKCCNHPYLFVGDYDMYKRKEEIVRASGKFELLDRLLQKLRRADLMALQKLRKEGSLLRKFNAPDSPYFMFLLSTRAGAQDRREMLEEIMRRGTSSLGTDVPRRLKENYRSRLMEEHELPDWVYSALNKDDKVKFFDSGSVTGKRKRKEVVYADTLSDLQWMKAVENGHDISKLSVKGKRRYHLPVDSHAQASDDLGTEERLLELRNGSVPMANERSSEDTFNVTPASKRLKHEQINTQKHENEDVGVSSLNEHMFSWNTHRKKRSNYLGQGSLSDTRGQNANGKANWN 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi631g00007 696 Coils Coil 81 101 - -
Sebi631g00007 696 PANTHER SNF2/RAD54 HELICASE FAMILY 236 271 - -
Sebi631g00007 696 MobiDBLite consensus disorder prediction 674 696 - -
Sebi631g00007 696 Pfam Snf2-ATP coupling, chromatin remodelling complex 513 569 IPR029295 GO:0042393
Sebi631g00007 696 Gene3D - 363 457 IPR027417 -
Sebi631g00007 696 Pfam SNF2-related domain 285 416 IPR000330 GO:0005524|GO:0140658
Sebi631g00007 696 SMART SnAC_2 508 569 IPR029295 GO:0042393
Sebi631g00007 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 366 486 IPR027417 -
Sebi631g00007 696 MobiDBLite consensus disorder prediction 95 119 - -
Sebi631g00007 696 Gene3D - 279 362 IPR038718 -
Sebi631g00007 696 Gene3D - 230 278 IPR038718 -
Sebi631g00007 696 MobiDBLite consensus disorder prediction 171 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi631g00007 Sebi-Chr631 101408 108261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi631g00007 270 424 RAD5 or RAD16-like Gene Family AT5G22750 27.976 1.40e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi631g00007 SNF2_N 8.2e-11 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi631g00007 - - cpap:110811638 376.326