Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi631g00002 ATGAGCAGCAATGAGATCGGCCAGAAGCCTCCGCCATCGATACTCGTTGCCCGATTCAAGGCCTTGCTCAAGCAACGCGACGATGACCCGAGGTTAAGGGCTTCGCTTCCCACCACTGAAGAAATTGTTCAGATTTATGAGTTGTTGTTGTCCGAACTCACCTGCAATGTTAAGCCCATCATCACTGATCTTACAATCATTGCCGAGCAGCAGAGGGAACATTCCAAGGGCATCGCTGAAGCTATTTGCGCTCGGATTCTTGAGGTGCCTGCAGATCAAAAGCTTCCTTCACTCTATCTTTTGGACAGTATTGTGAAGAATGTTGGCCAGGAATATGTTAGATACTTCTCTTTACGCCTACCTGAAGTTTTCTGTGAGGCATACAGACAGGTTCAACCGAATTTGCATTCTGCCATGCGACATCTCTTTGGTACCTGGTCAAAAGTCTTCCCTCCCTCTGTCCTACGCAAGATTGAAGCTCAATTGCAATTTTCTCAAGCAGTTAATAATCAACCATCCGGTGTTAATCCTCTCAGGAACTCTGAAACTCCTCGACCAACACATGGGATACATGTTAATCCAAAATACGTTGGAGGTGAAAGACTGGACTCAACAGGAACTGTAGGTAATGCAAGTTTTGGCCTTGTACCTAGTAAGATCCATCCATTTATGCCTAGTAGGCTTGGAAGGTCCTCCTCACCTTCAAGAATTGGACTTGATAGGCCATTGGCCACATATATGGATGAATATGCAGCTGACAATTCTGCTGGCAGGACAGTTGAGAGAGAATCTCCTCATCCCACAGTTGATTATGGAGTAGCTAAAGTGTTAGGTAGAGAAGAAGAGTTGGGTGAGTGGCAGCGAAAGCAGTTTTCTGGTGATATTCGGAAGAGGTTTCAAACTTCTATGACACACAGTCTTAGTAATGGACAACAGCGTCAAAGTCCAAGGGCTCTAATAGATGCATATGGCAGTGACAAAAGCCAAGAAACTTCTAGCAGTAAAGCTTTGTTAGTTAAACGGCTGGATAGAAATGGTATAGACAAGGTTGTGACAACATCATGGCAGAATACTGAAGAGGAGGAATTTGATTGGGAAGATATGAGTCCAACATTAGTAGACCATAGTAGAAATAATGGTTTCCTGCAATCAACTATTGGTTTCACCACGGAAAAACCTGTTATTATTCCTGCTAATGCAACTTCTTCAGAACAGGATACCAGGAAGGGTTGGTCTAGTGGGTCTCAGCTTCCTCCAGTGGATGATTCCTCTGTTTTAGCAGAAGATGCATTTGCCTCTTCAGCTTATAGTCGTGTATCACTGGGTCAGGTATCTGGATTCCAGAATCAAATAAATCAGAGTCTGGGCTCTGGTCAACATATTGATGCTTGGAAGATTTCTAATCATCCATCTAATTCTACACAACATCTGTTTAATATTAGGGGAGGAGGAAGGAGTCTTCTGATGCCTCCAATTGATAACATTCCCAATACTGATGTACATTCTTATGGGACTCGACTGGCTGTGTCAAGGATGGTTCCTGGTCTCAAGTCTAATGTGGAGGGTTCTCCGCCAATTTTGCCAGCTACTTTTGAAATGAGGCCCTCTTTAAATGTGCATGCTGCTCGTCCTCCCAGTTTAAATCCTATATTTCCATTGAAAAATCTTGGTAGGAGTCAATTTGAATCAATAAATGCTAATAATACCATTATGAGTCATGGTCCAAATAAATCTTTGCTTATGCGTGAACAATCATTGCACAATGTTGAGAACAAAGATATCAGTAAGGGAAACCTACATCATTTACCTAATCAGCTAGCTGGCCTGATTTCATCTAACCCGCAAAACCGTGGACAATCACCACAACCACAGTTTTTTCCATCTCAGGATCCAGCAGGATCACAATTTAGTTGTGGGAGCTCTTTGCAAGTACATGGTGCTGCTATAATTACACCCATGTCAAATGTGCCACCTGTTATGCCATTCCCTTTACCCGGCCAAAGTATTGCAAATAACTCTTTACATTCACAGGGGGGAACCTTGCCACCTTTACCTCCAGTGCGCCCTCCTGCTCCATCACAAATGTTACCTCATCCTAATCCTAGTCCTTTTGTGTCAAGTCAACAGCCAACTGTTGCGTATTCTAATTTGATTAATACACTCATGGCCCAAGGTGTAATCTCATTGACCAATCAGGCCCCTGTACAGGATTCTGTTGGAATTGAGTTTAATCCAGATATGCTGAAGATACGACATGAATCTGCAGTCAGTGCCTTGTATGGTGATCTCCCTAGACAATGCACAACTTGTGGTCTCCGATTCAAATGCCAAGATGAGCACAGTAATCACATGGATTGGCATGTGACGAAGAACCGGATGTCTAAAAACCGTAAGCAGAAGCCTTCTCGTAAATGGTTTGTGAGTGAAAGGATGTGGCTCAGTGGTGCAGAGGCATTGGGAACGGAATCAGTTCCAGGTTTTTTGCCAACTGAGACCATCGAGGAAAAGAAAGAAGATGAAGAGTTGGCTGTTCCTGCTGAAGAAGACCAGAATACGTGTGCGTTATGTGGTGAGCCTTTTGATGAGTTTTACAGTGACGAAACGGAGGAGTGGATGTATAGAGGAGCTGTATATCTTAATGCACCCAAGGGAACAACAGGAGGCATGGACAGGTCACAGTTAGGCCCCATTATTCATGCTAAATGCAGATCTGAATCTAGTATGGCCCCATCTGAAGATTTTGGGCTGGATGAAGGGGGCACCTTTGAGGAAGGCAATCAAAGAAAACGAATGCGGAGTTGA 2802 0.4379 MSSNEIGQKPPPSILVARFKALLKQRDDDPRLRASLPTTEEIVQIYELLLSELTCNVKPIITDLTIIAEQQREHSKGIAEAICARILEVPADQKLPSLYLLDSIVKNVGQEYVRYFSLRLPEVFCEAYRQVQPNLHSAMRHLFGTWSKVFPPSVLRKIEAQLQFSQAVNNQPSGVNPLRNSETPRPTHGIHVNPKYVGGERLDSTGTVGNASFGLVPSKIHPFMPSRLGRSSSPSRIGLDRPLATYMDEYAADNSAGRTVERESPHPTVDYGVAKVLGREEELGEWQRKQFSGDIRKRFQTSMTHSLSNGQQRQSPRALIDAYGSDKSQETSSSKALLVKRLDRNGIDKVVTTSWQNTEEEEFDWEDMSPTLVDHSRNNGFLQSTIGFTTEKPVIIPANATSSEQDTRKGWSSGSQLPPVDDSSVLAEDAFASSAYSRVSLGQVSGFQNQINQSLGSGQHIDAWKISNHPSNSTQHLFNIRGGGRSLLMPPIDNIPNTDVHSYGTRLAVSRMVPGLKSNVEGSPPILPATFEMRPSLNVHAARPPSLNPIFPLKNLGRSQFESINANNTIMSHGPNKSLLMREQSLHNVENKDISKGNLHHLPNQLAGLISSNPQNRGQSPQPQFFPSQDPAGSQFSCGSSLQVHGAAIITPMSNVPPVMPFPLPGQSIANNSLHSQGGTLPPLPPVRPPAPSQMLPHPNPSPFVSSQQPTVAYSNLINTLMAQGVISLTNQAPVQDSVGIEFNPDMLKIRHESAVSALYGDLPRQCTTCGLRFKCQDEHSNHMDWHVTKNRMSKNRKQKPSRKWFVSERMWLSGAEALGTESVPGFLPTETIEEKKEDEELAVPAEEDQNTCALCGEPFDEFYSDETEEWMYRGAVYLNAPKGTTGGMDRSQLGPIIHAKCRSESSMAPSEDFGLDEGGTFEEGNQRKRMRS 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi631g00002 933 MobiDBLite consensus disorder prediction 608 639 - -
Sebi631g00002 933 FunFam polyadenylation and cleavage factor homolog 4 35 163 - -
Sebi631g00002 933 SMART 558neu5 41 163 IPR006569 -
Sebi631g00002 933 MobiDBLite consensus disorder prediction 169 187 - -
Sebi631g00002 933 Gene3D - 34 164 IPR008942 -
Sebi631g00002 933 MobiDBLite consensus disorder prediction 682 696 - -
Sebi631g00002 933 MobiDBLite consensus disorder prediction 400 419 - -
Sebi631g00002 933 MobiDBLite consensus disorder prediction 673 696 - -
Sebi631g00002 933 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 37 918 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Sebi631g00002 933 SUPERFAMILY ENTH/VHS domain 38 163 IPR008942 -
Sebi631g00002 933 Pfam CID domain 56 157 IPR006569 -
Sebi631g00002 933 CDD CID_Pcf11 46 163 IPR047415 -
Sebi631g00002 933 ProSiteProfiles CID domain profile. 38 166 IPR006569 -
Sebi631g00002 933 MobiDBLite consensus disorder prediction 169 193 - -
Sebi631g00002 933 MobiDBLite consensus disorder prediction 904 933 - -
Sebi631g00002 933 ProSitePatterns Zinc finger C2H2 type domain signature. 767 787 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi631g00002 Sebi-Chr631 23053 29249 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi631g00002 705 933 C2H2 Transcription Factor Family AT4G04885 70.742 5.51e-108 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi631g00002 K14400 - gmx:100794796 1313.13