Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi62g00219 ATGCAAGCAGCTCAAGCATCAGCCACTGATGAAGCTCCTGAGATTTCCCATCAGACTGACATTCAGCTAAAGGAAGAAGTTTCTGCTAGTGGACCCAGTGGGAGGCGTCCAGATATTTCACTTCAAGTTCCACCTAGACCTTTAGGGTTTGGCAGCACTTGTGGTGGAAGGGTTCTTGACCATTCTCAAAGTTTCTCTAAAGGGATCTCATCATCAAAAGGCTTCTTGCGGGCATTGAGCTTCAAAAGAAAAGGAAATGTAGCAGATGGCGAAAGAAGCAGCCTCCTTAATTCAGACCCCAAGACAGCTGCAGACTGTCCTAATATGGCTTCCATATCTGAAATTGCATGGACAAGATGTACTTCTCTTCCTGTTACACCTGCATCAAATCTGTCCCCTTCAGTTTCTACACCTGTTTCTGCAAGGACATATAATGAACAGATTAAGCCACAAAAAGATGCTGTTCGTTCTAAGGTTTCAAGGTCCCTTTCCGTACCTGGACGAAGTGTTGTTATTGTAAGATCTGTCTCTTTTTCTACCCGTAGTGAACAGGAACAACAAGATGCAAATGATGATCAAATAACTCCTGTGCCAGTAGAAGGTGCAGATGATGAAGAAATTCCTGAAGAGGAAGCAGTGTGCAGGATATGTCTTGATGTGTGCGATGAAAGAAACACCTTTAAAATGGAATGCAGTTGCAAAGGTGACCTGAGATTGGTGCATGAAGAATGTGCAATTAAATGGTTTAGCACAAAAGGAAACAAGAAATGTGATGTGTGTGGGCAAGAAGTTCAGAATTTACCTGTTACTTTGCTTCGTGTGTCCAGCTCTGTTCAACGACAAAACAGACAGGTGCAGGGTCAGCAGAACCTACATCCAGAGTCAATAAGTGCCTGGCAAGACTTTGTGGTGCTTGTCCTGATAAGCACAATATGCTATTTTTTCTTCCTTGAACAGCTACTGCTTCCTGATTTGAAGACTCAAGCCATCATTATAGCAGCACCATTTGCCTTTACCTTGGGCCTCCTGGCATCTATTTTTGCAGTCATCCTTGCAATTAAAGAGTATATATGGACATATGCTGCACTTGAGTTTGCACTTGTGGCTATAACTGTGCATCTGTTTTATACTATGTTGCATTTGACAGCCATTTATGCAATACTACTTTCATCAGTTTTGGGTTTTGGAGCTGCTATGGGTATCAACTATTTATATATCCAGTATGTCACTTGGAGACTTCAGGTCTCTCATAATGATAACCCAGTATGA 1269 0.4224 MQAAQASATDEAPEISHQTDIQLKEEVSASGPSGRRPDISLQVPPRPLGFGSTCGGRVLDHSQSFSKGISSSKGFLRALSFKRKGNVADGERSSLLNSDPKTAADCPNMASISEIAWTRCTSLPVTPASNLSPSVSTPVSARTYNEQIKPQKDAVRSKVSRSLSVPGRSVVIVRSVSFSTRSEQEQQDANDDQITPVPVEGADDEEIPEEEAVCRICLDVCDERNTFKMECSCKGDLRLVHEECAIKWFSTKGNKKCDVCGQEVQNLPVTLLRVSSSVQRQNRQVQGQQNLHPESISAWQDFVVLVLISTICYFFFLEQLLLPDLKTQAIIIAAPFAFTLGLLASIFAVILAIKEYIWTYAALEFALVAITVHLFYTMLHLTAIYAILLSSVLGFGAAMGINYLYIQYVTWRLQVSHNDNPV 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi62g00219 422 PANTHER OS02G0165000 PROTEIN 41 418 - -
Sebi62g00219 422 SMART ringv_2 213 261 IPR011016 GO:0008270
Sebi62g00219 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 269 IPR013083 -
Sebi62g00219 422 MobiDBLite consensus disorder prediction 1 26 - -
Sebi62g00219 422 SUPERFAMILY RING/U-box 210 264 - -
Sebi62g00219 422 ProSiteProfiles Zinc finger RING-CH-type profile. 206 267 IPR011016 GO:0008270
Sebi62g00219 422 MobiDBLite consensus disorder prediction 1 55 - -
Sebi62g00219 422 Pfam RING-variant domain 214 260 IPR011016 GO:0008270
Sebi62g00219 422 CDD RING_CH-C4HC3_MARCH 214 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi62g00219 Sebi-Chr62 2398004 2402339 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi62g00219 227 322 C3H Transcription Factor Family AT5G59000 29.167 5.75e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi62g00219 - - gmx:100527094 701.434