Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi62g00214 ATGGAACCCCAATCCCAATCGCTTCCTCCACCACAGATGGACGCCGAAGACCCTTCTTCCTCTGTCTGGGACCTCACTTACCTCCTTGACTTCAATCTCGACGACGATTCACCTTTCCCCTTAAACCTCGACAAAATTTCACAACAACCTCTTCCCGAGCCATCGCACCCTAACGTCCCTAACCCCCAGCCCCAGCCCCAGCCTCAGGAGTTTCCCTCTCCCAACGATAAGGTCCGAAAGCGTGACCCGAGGCTCACCTGCTCCAACTTTCTTGCGGGTCGGGTCCCATGCGCCTGCCCCGAGCTCGATGCCAAGCTCGAGGACGATGGTTTACCCGGCAAGAAACGGGTTCGGACTGCACGTGCATCTGCATCCGCACGCTGCCAGGTGCCTGGCTGCGAGGTCGACATAACCGAGCTCAAAGGCTATCACCGGCGACATAGGGTTTGTTTGCGTTGCGCAAATGCCTCTACCGTTCTCCTTCACGACGAGCCCAAGAGATATTGTCAACAATGCGGAAAGTTTCACGATTTATCGGATTTTGATGAAGGTAAACGCAGCTGCAGAAGAAAATTAGAGCGTCATAACAACAGGAGGCGAAGAAAGCCCCTAGATTCTAGGGCTGCAACTGATCATGAACCTCAATCTGTTTCTCAAAATGAGGATTTCAACTGTGATACAGAAGCAGGAAAAGATTGTTCAAATTTGAGTAGCGAGTTAATTGAAAAAGGAGCATCCCCGGATCATGAGGATGAACCAGTTGCCATTCTGTCCTCAACTCCCGATACTCAGAATATCAATAGTGATAGTGTTGTGTCTTTTGCTGCTTCGGGTGAAACACAAGTCAATAATGGAAAAGATATTTCCAATATTTCTAAGTCACCCTCATATTGTGACAATAAGAGTGCTTATTCGTCTATGTGCCAAACAGGTCGGATTTCTTTCAAGCTTTATGATTGGAATCCTGCAGAATTTCCTAGAAGGCTACGACACCAAATATTCCAATGGTTGGCAAGTATGCCTTTGGAGCTGGAGGGATATATACGCCCTGGGTGTACGATCCTGACAGCTTTTATTGCAATGCCAAAAATCATGTGGATAAATTTACTCAATGACCCTCTGTACTTTGTGCGTGATCTTGTTGCTCCCAGAAAGATGCTATCTGGAAGAGGCACCACACTAATTTATCTGAATGACATGATCTTCCGTGTTGTGAAAGATGGATCTTCTGTGACAAAAGTCGAGGTAAACATGCAGGCACCAAGACTTCACTATGTTCATCCCACATGCTTTGAAGCTGGCAAACCCATGGAATTTGTTGCTTGTGGAAGTAACTTGCTGCAGCCTAAGTTTCGGCTTCTTGTATCTTTTTCTGGAAAATATCTGAAGTATGAGTATTGCGTTCCATCTCCACATAACAGGACTGAAGACAATATTTATTGTTCTTTTGACAATCAGTTATACAAGATATGTGTCCCTCATACAGAGGAAAATTTCTTTGGGCCTGCATTTATTGAGGTGGAGAACGAATCTGGGTTATCAAACTTTATTCCTGTACTCATTGGGGATAAAGAAATTTGCACTGAAATGAAGACATTGCAGCAGAAATTAGATATATTGCCCCGTTCTAAACAATTCCAGTCTGCATCTGGTGGTTCTATCTGCAGCTCATGTGAAGCTTTTGCTCTAAGACACACATCTTCATCAGACTTACTTGTAGATATAGCATGGTTGCTGAAGGATCCAACTTCCGGAAATTTTGACAGAGTGATGACAGCTTCACAAATTCAAAGATATTGTTATCTGTTAGATTTTCTAATATGCAACGATTCAACAGTCATTTTGGGAAAAATATTACCAAATTTGATAACCTTAATAAAAAGCATGAAATCCAATTTTGTGATTAATAGGATTAGTGATGTTGATCTGATGCAACTACTAAAATGCATGCAAAATGCTAGAGATGCCATTTATCAAAAACATCAGAAAGGTGGAGGTGTAGTTGCGCACTCAGGAACGCAACGCTTTGAACTACCTCAGAGCATCTGCCAAGATAACATGCTATCAGTTGTTAAAGTCAACTGTCAGGGTATCCCAACTGGAGCAGATGCGAAGTTGGGAGTTCTGAGAAATCCCACTTCTAATGACAAAAATGAAAGCATACCACTTTTGAAGAGGGAGATTATAATGAATGTGGAAGAGGTCCCTAGAAGATGTGACCGTCGGGGTATGTGTATCCATACTTCATCATGGGAGGGTTAG 2262 0.4368 MEPQSQSLPPPQMDAEDPSSSVWDLTYLLDFNLDDDSPFPLNLDKISQQPLPEPSHPNVPNPQPQPQPQEFPSPNDKVRKRDPRLTCSNFLAGRVPCACPELDAKLEDDGLPGKKRVRTARASASARCQVPGCEVDITELKGYHRRHRVCLRCANASTVLLHDEPKRYCQQCGKFHDLSDFDEGKRSCRRKLERHNNRRRRKPLDSRAATDHEPQSVSQNEDFNCDTEAGKDCSNLSSELIEKGASPDHEDEPVAILSSTPDTQNINSDSVVSFAASGETQVNNGKDISNISKSPSYCDNKSAYSSMCQTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPLELEGYIRPGCTILTAFIAMPKIMWINLLNDPLYFVRDLVAPRKMLSGRGTTLIYLNDMIFRVVKDGSSVTKVEVNMQAPRLHYVHPTCFEAGKPMEFVACGSNLLQPKFRLLVSFSGKYLKYEYCVPSPHNRTEDNIYCSFDNQLYKICVPHTEENFFGPAFIEVENESGLSNFIPVLIGDKEICTEMKTLQQKLDILPRSKQFQSASGGSICSSCEAFALRHTSSSDLLVDIAWLLKDPTSGNFDRVMTASQIQRYCYLLDFLICNDSTVILGKILPNLITLIKSMKSNFVINRISDVDLMQLLKCMQNARDAIYQKHQKGGGVVAHSGTQRFELPQSICQDNMLSVVKVNCQGIPTGADAKLGVLRNPTSNDKNESIPLLKREIIMNVEEVPRRCDRRGMCIHTSSWEG 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi62g00214 753 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 62 614 IPR044817 GO:0003677
Sebi62g00214 753 Pfam SBP domain 128 202 IPR004333 GO:0003677
Sebi62g00214 753 ProSiteProfiles Zinc finger SBP-type profile. 125 202 IPR004333 GO:0003677
Sebi62g00214 753 MobiDBLite consensus disorder prediction 1 20 - -
Sebi62g00214 753 MobiDBLite consensus disorder prediction 192 224 - -
Sebi62g00214 753 MobiDBLite consensus disorder prediction 38 81 - -
Sebi62g00214 753 SUPERFAMILY SBT domain 126 206 IPR036893 GO:0003677|GO:0005634
Sebi62g00214 753 MobiDBLite consensus disorder prediction 53 71 - -
Sebi62g00214 753 Gene3D - 119 189 IPR036893 GO:0003677|GO:0005634
Sebi62g00214 753 MobiDBLite consensus disorder prediction 243 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi62g00214 Sebi-Chr62 2338527 2344496 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi62g00214 8 750 SBP-box Gene Family AT5G18830 48.177 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sebi62g00214 SBP 8.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi62g00214 - - aprc:113863838 1101.66