Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi62g00190 ATGATCGTAGAGGAGCATCCTGTTGGTACTGAACTGGCGATGAACAATGCTGCTGGGGAGGGGGGAATAGATTTTTCTTGTGATCCATACATAGGGTTAGAATTTCATTCAGCAGATGATGCACTTAAATTTTACACATCATATGGTAATCGAATGGGATTTAAAGTCCGGATTGGTCAGCTTTATCGATCAAGAACTGATGGATCGGTTTCTTCTCGAAGATTTGTGTGCTCAAAGGAGGGATTTCAGCTCAGCTCAAGAACAGGCTGTCCAGCATTCATAAGGGTACAAATAAATGCTTCTGGAAGGTGGGTTATTGATCATTTTCATAAGGACCACAATCACAATCTTGAAATCAATGGTGAAAATTGCACTCTGACATTGCCACAGAAGGGTGCTCCATCTATCAATTCTTTTACTGAAGTACCTCGCAGGCCAAGGAAGAAATTTCTTGAAGAAACCAATGATGGGCCCACTTGTCCCTTTGGCGTTATTAATTTCAAGCGCCTGAGAAAGGAAGAACATGAAGGACAGCTGAGGACTGAACCACATGTGGGTCAAGAGTTCAATTCGCCTAATGAAGCCTACCAATTTTATAATGCATATGCAGCATATTGTGGTTTCAGAATTCGAATTGGTCAATTGTTTCGTTCTAAGAATGATGGGTTGGTTACATCCCGGCGATTTGTGTGCTCAAAAGAGGGGTTCCAGCACCCTTCAAGAGTTGGCTGTAGGGCTTATTTAAGGATTAAGAGACAACCATCGGGAAAGTGGGCAGTAGACCGTCTCCGAAAAGATCATAATCATGATTTGGACTCTGAAAAGGAGGTTGGGGCAAAAAGTCTTCCTGCTTCTAATACTTTGACTGAGGAGGCAAAGGAACAAGAGAATGTCGGTCTGCTGGGTAACGGGTTTACAAAAGATTATGAAAAGTGTGTTTACCAGAGTCAGGCAGCTGATGAATTTGACACCACATGGAATGCCCTACTCAACAAATATGGATTGAAGGACAATGGTTGGCTGAGAGAAATGTATGAGAAGCGTGCATCCTGGGTTCCATTATATTTAAAAGGCACATTTTTTGCTGGAATTCCAATGAATGAAAGCGTGGATTCATTCTTTGGTTCACTTTTAAATGCCCAAACACCTCTCACAGAGTTCATTCCACGGTATGAAAGAGGTCTTGAGCGTCGCCGTGAGGAAGAAAGAAACGAGGATTTTAATACTTCTAATTTTCAACCCCTTTTGCAAACAAAAGAACCCGTAGAAGAACAATGTAGAAGGCTTTATACTCTTACAGTATTCAAAGTTTTCCAAAAAGAGCTTTTGCAGTGCTATAGTTATCTTGGGTTTAAAATATATGAAGAAGGGGGCCTCAGCAGATATTTGGTGCGTAAGTGTGGAAATGATATGGAGAAGCATGTAGTTACATTTAATGCATCCAATCTCAGCATTAATTGTAGCTGCCAGATGTTTGAATATGAGGGTGTTCTTTGTAGACATGTGTTGAGGGTTTTCCAGATATTAGAATTAAGAGAAGTTCCTTCTCGTTACATCTTACACAGATGGACAAGAAATGCTGAAGATGGTGTTTTTCCTGACATAGAATCATGGAGTAGCTCTCAGGAACTCAAAAATTTGATGCTATGGAGTCTAAGAGAAACTGCATCTAAATACATAGATGCCGGTGCAACATCCATTGAAAAGTATAAACTTGCCTATGAGATTTTGCGAGAGGGTGGGAGAAAGCTATGTTGGCACAGGTGA 1767 0.4092 MIVEEHPVGTELAMNNAAGEGGIDFSCDPYIGLEFHSADDALKFYTSYGNRMGFKVRIGQLYRSRTDGSVSSRRFVCSKEGFQLSSRTGCPAFIRVQINASGRWVIDHFHKDHNHNLEINGENCTLTLPQKGAPSINSFTEVPRRPRKKFLEETNDGPTCPFGVINFKRLRKEEHEGQLRTEPHVGQEFNSPNEAYQFYNAYAAYCGFRIRIGQLFRSKNDGLVTSRRFVCSKEGFQHPSRVGCRAYLRIKRQPSGKWAVDRLRKDHNHDLDSEKEVGAKSLPASNTLTEEAKEQENVGLLGNGFTKDYEKCVYQSQAADEFDTTWNALLNKYGLKDNGWLREMYEKRASWVPLYLKGTFFAGIPMNESVDSFFGSLLNAQTPLTEFIPRYERGLERRREEERNEDFNTSNFQPLLQTKEPVEEQCRRLYTLTVFKVFQKELLQCYSYLGFKIYEEGGLSRYLVRKCGNDMEKHVVTFNASNLSINCSCQMFEYEGVLCRHVLRVFQILELREVPSRYILHRWTRNAEDGVFPDIESWSSSQELKNLMLWSLRETASKYIDAGATSIEKYKLAYEILREGGRKLCWHR 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi62g00190 588 Pfam FAR1 DNA-binding domain 197 271 IPR004330 -
Sebi62g00190 588 Pfam FAR1 DNA-binding domain 43 117 IPR004330 -
Sebi62g00190 588 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 173 288 IPR031052 GO:0006355
Sebi62g00190 588 Pfam SWIM zinc finger 481 507 IPR007527 GO:0008270
Sebi62g00190 588 ProSiteProfiles Zinc finger SWIM-type profile. 474 510 IPR007527 GO:0008270
Sebi62g00190 588 SMART 26again6 485 512 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi62g00190 Sebi-Chr62 2079410 2081692 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi62g00190 FAR1 8.3e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi62g00190 - - gmx:100816656 559.681