Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi62g00187 ATGATGAACCTTCAATATAATCAGCTTTCGGGCAACATATCATCCATAATTTTCAACAACTCATTGTTGCAATATCTGGCTCTTGGTCAGAATAATCTGTTCGGCAATATTCCATCAAATATTTGTCAAGGCCTTCCAAACCTTAGATTACTTTATCTTTATGCTAATGATATTTCCGGTGAAATGCCGACTCTTTGGCATCAATGTAAAGAGTTGGTAGATTTGGAACTATCCTTCAATAATTTCAACAAAGGACGTATTCCAGGTGACATTGGAAACTTGACCAAGCTTCAATATCTATATCTTCGTAGCAACAACTTGGAGGGTGAAATTCCATTCTCCCTTTTCAACATCTCTTCTTTGAGACAGGTCAACCTTGACAAAAATTACAATTTAAATGGAAGTCTTCCACATAAGATGTGTGATCAACTTCCTCAACTTGAAATGTTTACTTTACAAGTTAATCAATTGGAAGGAAGCATTCCGCGATCAATTGGCAATTGCACATCGCTGAAAATATTAAGTTTTGAGGACAACTATTTTACAGGTTCAATACCCATGGAAATTGGCAACCTTGATCAACTTGAGGTTCTACAATTGGGAAATAACAGCTTGAGTGGACCAATTCCTTCAAAACTTTTCAACATCTCAACATTGACATACTTGCGTCTTGCAAATAATTCTCTCACTGGCATTCTTCCATCAGATATGGGGTATGGCCTTCCTAACTTGGAACAACTACACATGTATTCAAACAAACTTATTGGAAACATTCCAAATACTATATCCAATTCTTCTAAGCTCACTATAGTTGACTTGGGTGAGAATAGATTCAGCGGAATCATACCCAATTCCTTTGGAGATTTAACACTCCTTGAATCACTCCTTATAGCTGGCAATAATTTGACAACATATGATTCTCCTGAACTCAACTTTCTTACTTCATTGACAAGTTGTAGACACTTGACATATTTGGAAGTAACAGGAAATAGTTTACTATCAAAACTTCCCAAATCAATTGGAAACTTATCAAAGTCTCTAGAACAGTTTGTGGCAAATTCTTGTAGAATTGATGGTGATATTCCACTGGAAATTGGAAACATGAGCAACCTGATACGTTTATCTTTGAATAGGAATAATATGAATGGACCAATGCCTGCTACAATCAAAGGGTTAAAAAAACTTCAATATTTTGGTCTTGCTTACAATGGACTACAGGGATCCATCATTGATGAGCTTTGTCAAATTAGGAGTTTAAGTCAGTTGTATCTGACAAAAAATAACCTTTCTGGAGTGTTACCAACATGCTTGGGAAATATGACTTCTCTTAGAAAAATATACATGGGATCCAACAAATTGATATCTCAAATACCTTCCTCTTTTTGGAGTTTGAAAGATATCTTAGAGGTAAACTTCTCCTCTAATGCTTTAACTGGAAATCTTCCACTTGAGATTGGGCAGTTGAGAGCTCTTGTACTATTGGATCTGTCAGGAAATGAGATTTCAAGCAACATTCCTACAACCATCAGTTTCTTGAAAACTTTGCAGTTTCTTTCCTTAGCACAGAACAAATTACAAGGGTCTATTCCCCCATCACTTAGTGAAATGGTAAGCTTGAGCTTCTTGGACTTATCCCAAAATCTTTTGTCTGGTGTGATTCCAAAATCCTTAGAGTCACTTGTCTATCTTAAATACATCAACTTTTCATACAATAGATTACAAGGAGAGATTCCTGATGATGGACCTTTCAAAAATTTGACAGCTCAATCTTTCATGCATAATGAGGCACTTTGTGGCAATCCTCGCTTACAAGTACCTCTATGTGGTAAACAGGACAAGAGAAAGAAAAAGGTTGAAAATTCAGCTGAAATGGATTTATCAGGTTTAGGAGCACTGAGAAGGATTTCCTATTATGAACTCATACAAGCAACTAATGGATTCAGTGAGAGTAATTTACTTGGAAAGGGAAGCTTTGGTTGTGTGTATCAAGGGATGCTTTCTAATGGGAAGATGGTTGCAATTAAAGTAATTGATTTGGCTTTGGAAGCAACATCAAAGAGCTTTGATGCAGAGTGCAATGCAATGCGCAATCTACGACACAGAAATCTTGTCAAGATTATTAGTAGTTGTTCAAATGTTGATTTCAAATCTTTGGTAATGGAGTTCATGTCTAATGGAAGCCTAGACAAATGGTTATACTCAGATCACTACTGTTTAGATTTCTTGCAAAGGTTGAATATAATGATAGATGTGGCATCTGCATTGGAATATCTCCATCATGGTTCTTCAATACCGGTGGTTCATTGTGATTTGAAGCCTAGTAATGTTTTATTGGATGAAAACATGATTGGACATGTTAGTGATTTTGGCATTGCCAAACTATTGGATGAAGGACAGTCTAAAACTCATACTGAAACCTTGGCTACTCTTGGCTACATTGCACCAGAGTATGGATCAAAGGGAATTGTTTCTATCAAAGGAGATGTATACAGCTATGGGATTATGCTAATGGAAGTCTTCACTGGAAAGAAGCCAATAGATGATTCACCTGAAGCACGATTAAATATGACACATGTCACTGCATCATTAACCAAAATCAAAACCTTGTACACCCAATATTAA 2622 0.3623 MMNLQYNQLSGNISSIIFNNSLLQYLALGQNNLFGNIPSNICQGLPNLRLLYLYANDISGEMPTLWHQCKELVDLELSFNNFNKGRIPGDIGNLTKLQYLYLRSNNLEGEIPFSLFNISSLRQVNLDKNYNLNGSLPHKMCDQLPQLEMFTLQVNQLEGSIPRSIGNCTSLKILSFEDNYFTGSIPMEIGNLDQLEVLQLGNNSLSGPIPSKLFNISTLTYLRLANNSLTGILPSDMGYGLPNLEQLHMYSNKLIGNIPNTISNSSKLTIVDLGENRFSGIIPNSFGDLTLLESLLIAGNNLTTYDSPELNFLTSLTSCRHLTYLEVTGNSLLSKLPKSIGNLSKSLEQFVANSCRIDGDIPLEIGNMSNLIRLSLNRNNMNGPMPATIKGLKKLQYFGLAYNGLQGSIIDELCQIRSLSQLYLTKNNLSGVLPTCLGNMTSLRKIYMGSNKLISQIPSSFWSLKDILEVNFSSNALTGNLPLEIGQLRALVLLDLSGNEISSNIPTTISFLKTLQFLSLAQNKLQGSIPPSLSEMVSLSFLDLSQNLLSGVIPKSLESLVYLKYINFSYNRLQGEIPDDGPFKNLTAQSFMHNEALCGNPRLQVPLCGKQDKRKKKVENSAEMDLSGLGALRRISYYELIQATNGFSESNLLGKGSFGCVYQGMLSNGKMVAIKVIDLALEATSKSFDAECNAMRNLRHRNLVKIISSCSNVDFKSLVMEFMSNGSLDKWLYSDHYCLDFLQRLNIMIDVASALEYLHHGSSIPVVHCDLKPSNVLLDENMIGHVSDFGIAKLLDEGQSKTHTETLATLGYIAPEYGSKGIVSIKGDVYSYGIMLMEVFTGKKPIDDSPEARLNMTHVTASLTKIKTLYTQY 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi62g00187 873 Pfam Protein kinase domain 648 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi62g00187 873 SUPERFAMILY Protein kinase-like (PK-like) 629 861 IPR011009 -
Sebi62g00187 873 Gene3D Ribonuclease Inhibitor 309 617 IPR032675 -
Sebi62g00187 873 Gene3D Ribonuclease Inhibitor 1 308 IPR032675 -
Sebi62g00187 873 ProSitePatterns Protein kinases ATP-binding region signature. 653 675 IPR017441 GO:0005524
Sebi62g00187 873 SMART LRR_typ_2 440 464 IPR003591 -
Sebi62g00187 873 SMART LRR_typ_2 94 118 IPR003591 -
Sebi62g00187 873 SMART LRR_typ_2 416 439 IPR003591 -
Sebi62g00187 873 SMART LRR_typ_2 266 288 IPR003591 -
Sebi62g00187 873 SMART LRR_typ_2 488 512 IPR003591 -
Sebi62g00187 873 SMART LRR_typ_2 241 265 IPR003591 -
Sebi62g00187 873 SMART LRR_typ_2 536 559 IPR003591 -
Sebi62g00187 873 SMART LRR_typ_2 45 68 IPR003591 -
Sebi62g00187 873 SMART LRR_typ_2 192 216 IPR003591 -
Sebi62g00187 873 SMART LRR_typ_2 144 168 IPR003591 -
Sebi62g00187 873 SUPERFAMILY RNI-like 240 579 - -
Sebi62g00187 873 FunFam Os07g0541700 protein 723 810 - -
Sebi62g00187 873 FunFam Serine-threonine protein kinase plant-type 628 722 - -
Sebi62g00187 873 ProSiteProfiles Protein kinase domain profile. 647 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi62g00187 873 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 314 857 - -
Sebi62g00187 873 SUPERFAMILY RNI-like 3 305 - -
Sebi62g00187 873 Gene3D Phosphorylase Kinase; domain 1 630 722 - -
Sebi62g00187 873 SMART LRR_sd22_2 192 218 - -
Sebi62g00187 873 SMART LRR_sd22_2 488 507 - -
Sebi62g00187 873 SMART LRR_sd22_2 512 535 - -
Sebi62g00187 873 SMART LRR_sd22_2 94 120 - -
Sebi62g00187 873 SMART LRR_sd22_2 319 345 - -
Sebi62g00187 873 SMART LRR_sd22_2 440 459 - -
Sebi62g00187 873 SMART LRR_sd22_2 536 557 - -
Sebi62g00187 873 SMART LRR_sd22_2 241 260 - -
Sebi62g00187 873 Gene3D Transferase(Phosphotransferase) domain 1 723 872 - -
Sebi62g00187 873 ProSitePatterns Serine/Threonine protein kinases active-site signature. 766 778 IPR008271 GO:0004672|GO:0006468
Sebi62g00187 873 SMART serkin_6 647 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi62g00187 873 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 318 612 - -
Sebi62g00187 873 Pfam Leucine rich repeat 194 254 IPR001611 GO:0005515
Sebi62g00187 873 Pfam Leucine rich repeat 490 549 IPR001611 GO:0005515
Sebi62g00187 873 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 130 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi62g00187 Sebi-Chr62 2066733 2070091 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi62g00187 72 848 Receptor kinase-like Gene Family AT3G47570 39.546 7.22e-173 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Sebi62g00187 Pkinase 4.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi62g00187 - K13420 vvo:131644871 1002.28