Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi62g00181 ATGGCTTCCGTTGCTTTTAGAAACCCAAATTCTAAATGCCTTCTTCTCTCTTTCCATTTCATATCTCGCGGAACTTGCACCGTTTCCCAAAACTTCCCCCTCTACAACAATGAACCTCCTTTTCCTCTGCGGAGATCCATGGCCACTTTCACTCGAACAAAGCCCCATCTTAATGTGGGCACCATTGGGCATGTTGATCATGGGAAAACCACACTAACTGCTGCAATTACGAAGGTGCTAGCTGAAGAAGGTAAAGCCAAAGCCATTGCCTTTGAGGAGATAGACAAGGCTCCTGAGGAGAAGAAGAGAGGAATTACAATTGCTACAGCTCATGTTGAGTATGAGACAGCAAAGAGGCACTATGCCCATGTTGATTGCCCAGGACATGCAGACTATGTTAAGAACATGATAACTGGAGCTGCGCAAATGGATGGTGGAATCCTTGTGGTTTCTGCTCCAGATGGACCAATGCCTCAAACAAAAGAACATATACTGCTTGCTCGTCAGGTTGGTGTGCCATCACTGGTATGCTTTCTAAATAAGGTAGATGCTGTTGATGACCCAGAGTTACTTGAACTTGTGGAAATGGAGCTTCGTGAACTACTTAATTTCTACAAATTTCCTGGGGATGAGATCCCAATAGTCCGAGGTTCAGCCCTGTCTGCCCTGCAAGGGACTAATGAAGAACTTGGAAAGAAGGCTATCTTAAAACTAATGGATGCTGTGGATGAATATATTTCTGATCCTGTGAGGCAGCTTGATAAGCCTTTCTTAATGCCAGTAGAAGATGTTTTCTCGATTCAGGGGCGTGGAACTGTTGTGACTGGTCGTGTTGAACAAGGCACCATCAAAGTTGGTGAGGAGGTTGAAGTATTGGGACTAACACAGGGTGGACCTTTGAAGACTACTGTAACTGGTGTGGAAATGTTCAAGAAAATTTTGGATCGAGGGGAAGCTGGTGATAATGTGGGACTTCTTCTACGAGGTCTGAAGCGTGATGATGTACAGCGGGGAATGGTTGTCACCAAGCCTGGTGCATTGAAAACGTATAAGAAGTTTGAAGCAGAGATTTATGTCCTCTCAAAAGATGAAGGTGGTCGTCATACTGCTTTCTTCTCTAATTATAGGCCTCAGTTCTACCTTAGGACTGCAGATATTACTGGAAAGGTGGAATTACCTGAGAATGTTAAGATGGTTATGCCTGGCGATAATGTGAGTGCAACTTTTGAGTTGATATCACCTGTTCCTCTTGAACCAGGACAAAGATTTGCTTTGAGAGAGGGAGGCAGAACAGTTGGTGCAGGAGTGGTCTCCAAAGTGATTACCTAA 1329 0.4447 MASVAFRNPNSKCLLLSFHFISRGTCTVSQNFPLYNNEPPFPLRRSMATFTRTKPHLNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFEEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLNFYKFPGDEIPIVRGSALSALQGTNEELGKKAILKLMDAVDEYISDPVRQLDKPFLMPVEDVFSIQGRGTVVTGRVEQGTIKVGEEVEVLGLTQGGPLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKRDDVQRGMVVTKPGALKTYKKFEAEIYVLSKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMVMPGDNVSATFELISPVPLEPGQRFALREGGRTVGAGVVSKVIT 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi62g00181 442 Gene3D Translation factors 386 441 - -
Sebi62g00181 442 PRINTS GTP-binding elongation factor signature 138 149 IPR000795 GO:0003924|GO:0005525
Sebi62g00181 442 PRINTS GTP-binding elongation factor signature 58 71 IPR000795 GO:0003924|GO:0005525
Sebi62g00181 442 PRINTS GTP-binding elongation factor signature 102 110 IPR000795 GO:0003924|GO:0005525
Sebi62g00181 442 PRINTS GTP-binding elongation factor signature 175 184 IPR000795 GO:0003924|GO:0005525
Sebi62g00181 442 PRINTS GTP-binding elongation factor signature 122 132 IPR000795 GO:0003924|GO:0005525
Sebi62g00181 442 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 95 110 IPR031157 -
Sebi62g00181 442 Gene3D Translation factors 252 382 - -
Sebi62g00181 442 NCBIfam elongation factor Tu 46 441 IPR004541 GO:0003746|GO:0005525|GO:0006414
Sebi62g00181 442 PANTHER ELONGATION FACTOR TU-RELATED 49 441 - -
Sebi62g00181 442 SUPERFAMILY Translation proteins 251 347 IPR009000 -
Sebi62g00181 442 Pfam Elongation factor Tu domain 2 271 342 IPR004161 GO:0005525
Sebi62g00181 442 Gene3D - 46 249 IPR027417 -
Sebi62g00181 442 FunFam Elongation factor Tu 45 249 - -
Sebi62g00181 442 CDD EF_Tu 55 249 IPR041709 -
Sebi62g00181 442 Hamap Elongation factor Tu [tuf]. 45 442 IPR004541 GO:0003746|GO:0005525|GO:0006414
Sebi62g00181 442 Pfam Elongation factor Tu GTP binding domain 54 247 IPR000795 GO:0003924|GO:0005525
Sebi62g00181 442 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 272 IPR027417 -
Sebi62g00181 442 CDD EFTU_II 257 345 IPR033720 -
Sebi62g00181 442 CDD EFTU_III 348 437 - -
Sebi62g00181 442 Pfam Elongation factor Tu C-terminal domain 347 440 IPR004160 -
Sebi62g00181 442 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 54 250 IPR000795 GO:0003924|GO:0005525
Sebi62g00181 442 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 351 441 IPR009001 -
Sebi62g00181 442 NCBIfam small GTP-binding protein domain 58 195 IPR005225 GO:0005525
Sebi62g00181 442 FunFam Elongation factor Tu 252 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi62g00181 Sebi-Chr62 2014076 2018295 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi62g00181 52 440 Eukaryotic Initiation Factors Gene Family AT5G60390 30.575 2.19e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi62g00181 K02358 - gmx:102667962 780.015