Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi62g00168 ATGGGTATTTCCTGGAGTAGCAGAAGAAGAAACAATTTTATTCAGAACCCACCTCCACCACCCCCTCTTCCACCGCCTTACTATTACTCTGCTGAATCCCACCCTCCACCGCCACCTCCTCCCCCGCCGCAAGGTTACTACTTTCCCTCTACAACCCCTTATACCCCACACTGTACTAACTATGTCTCTCCCCCTCCTTTGCCCCCACCACAAACCCACTCCTACTACTATTCTAACCCCAATGGCTACACCAACTATGGCGTGGGTCGCGTTCATTACCACCCTTTCTATGTGAATCAACATGGTTGGGCTCCACCTCGCCCTTGTGCTGCTCCTCCCTCCAACCCACCACCCTATGTCGACCATCAAACTGCTAAGAAGATCAGAAACTATGTCAATGTCCACAAAGACACCTTACGCCTTGAGGTTGATGACCACAACCCTGATCACCACCTCGTTACCTTCGTTTTTGATGCTGTTTATGATGGCAGCATAACTATCTTCTACTTTGCCAAGGAAGAAGAGAAATGTAGGTTTGTTCCACTATATCCTGATGCATTTGAGCCAGTCAGGATCCCTTTTCAGAAAGGAGTTGGCCAGAAATTTGCTCAGCCTTCAGGAACAGGGATTGACCTAGGCTTCTTTGAGTTGGATGATCTTTCAAAGTCCTCACCTGGAGAAGATGTCTTTCCTCTTGTAATATGTGCTGAAACATGTTTGAAAACTCCCTCAGCAGCCGAAACTCCTGATGATTCCATGCTCGACGCATCCCCTCACATGCAAGTAACTCAAGGTGTCCTAGAGAAAAGAAATGGTAGCGGTCCTTTCCAGATAAAAGTAGTTAGGCAGATTCTGTGGATTGATGGTGTTCGTTATGAGTTGAGAGAATTATATGGAATTGGAAGCTCCGCAGCAACAGATTTTGATGACAGTGATCCTGGGAAGGAGTGTGTAATATGCATGACTGAACCAAAGGTTACGGCTGTGTTACCTTGTCGACATATGTGTATGTGCAGTGAGTGTGCAAAAGCTCTGCGGCTTCAATCCAATAAATGCCCTATATGCCGTCAGTCTATTGAGGAACTTATAGAGATCAAGATGAACAATGGCGATCAATGA 1119 0.4647 MGISWSSRRRNNFIQNPPPPPPLPPPYYYSAESHPPPPPPPPPQGYYFPSTTPYTPHCTNYVSPPPLPPPQTHSYYYSNPNGYTNYGVGRVHYHPFYVNQHGWAPPRPCAAPPSNPPPYVDHQTAKKIRNYVNVHKDTLRLEVDDHNPDHHLVTFVFDAVYDGSITIFYFAKEEEKCRFVPLYPDAFEPVRIPFQKGVGQKFAQPSGTGIDLGFFELDDLSKSSPGEDVFPLVICAETCLKTPSAAETPDDSMLDASPHMQVTQGVLEKRNGSGPFQIKVVRQILWIDGVRYELRELYGIGSSAATDFDDSDPGKECVICMTEPKVTAVLPCRHMCMCSECAKALRLQSNKCPICRQSIEELIEIKMNNGDQ 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi62g00168 372 PANTHER MAHOGUNIN 1 367 IPR045194 GO:0061630
Sebi62g00168 372 ProSiteProfiles Zinc finger RING-type profile. 317 356 IPR001841 -
Sebi62g00168 372 FunFam probable E3 ubiquitin-protein ligase LOG2 301 366 - -
Sebi62g00168 372 MobiDBLite consensus disorder prediction 14 48 - -
Sebi62g00168 372 CDD mRING-HC-C3HC5_MGRN1-like 315 356 IPR045195 -
Sebi62g00168 372 MobiDBLite consensus disorder prediction 1 48 - -
Sebi62g00168 372 Pfam Zinc finger, C3HC4 type (RING finger) 315 361 - -
Sebi62g00168 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 367 IPR013083 -
Sebi62g00168 372 SMART ring_2 317 355 IPR001841 -
Sebi62g00168 372 SUPERFAMILY RING/U-box 316 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi62g00168 Sebi-Chr62 1802697 1807446 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi62g00168 89 372 C3H Transcription Factor Family AT3G06140 59.596 9.58e-112 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi62g00168 - - gsj:114373285 540.806