Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi62g00100 ATGTTAGGAAAATCATGTTCTGAGATTGAGATACCACAAACTCCATGTGATGACGATGAGCGTATCTATTGTGACCATTGTGCTACATCAATTATTGACCTTCATAGAAGCTGCCCCAAGTGTTCCTTTGAAATCTGCCTAAGTTGTTGCCAAGAAATACGCAATGGAAGTATTTCACCCCGGTCTGAAATGAAGTTTCAATATGTGTTTAAGGGCTATGATTATATGCATGGTGGTGATCCATTACCAGTGTCTTGTGATGATTTAGGGACTTCAGAGAGTCATGTTGAGTTATCTACCAAATGGAAAGCCAACAGTGATGGAAGTGTTAGGTGTGCTCCAAAAGAATGGGGAGGTTGTGGTGGCTGTGTGTTGGAGCTGAAGTGCATGCTTCCAAATGGGTGGATATCTGACTTGGAAGCCAGAGCTCGTCACATGCAAAAATTTTTTTGCAAAATTGAACAAACAGCACTTCAGAAAGAAGCAGCATCAAGTTGCAATTCTGTGATAAGAGCTGCATTTAGAGATGGCACAAATGATAATAACATATACTATCCAGCATCAAATGACCTCGTAAAAGAAGGGCTATTTCACTTCCAAAAGCATTGGATTAATGGTGAACCAGTTATAGTCCGTGATGTCCTTAAACAAGGGACAGGTCTGAGTTGGGAGCCAATGGTCACCTGGCGAGCATTAAGTGAAAAATTGGATTCAGGGATCAGCTCAAATATGTCACAAGTGAAGGCCATTGATTGCCTGACTAGTTGTGAGGTAGAAATCAACACTCTCAAGTTCTTTAAAGGTTATACAGAAGGGAGAACATATAACAATCTGTGGCCAGAGATGCTCAAGCTGAAAGACTGGCCCCCCTCTGACAAGTTTGAAAATCTTTTGCCCCGCCATTGTGATGAGTTTATCCGTTGCTTGCCATTTCAAGAGTATAGTGATCCTCGAGCTGGAATCCTCAACCTTGCTGTAAGGTTGCCAAACCATATCCTAAAACCTGACTTGGGTCCAAAAACGTATATTGCTTATGGGATTAGAGAAGAACTTGGCAGAGGAGATTCTGTAACAAAACTTCATTGTGATATGGCAGATGCGGTGAATATTTTGACCCATACATCTGAGGTGATATTAACTGATGAACAGCACTCTGTTATTTCACAAGTAAAAAAAGCACACAAGGCCCAAGATGAGAAAGAGCGTGGTGCTCAAGCTAGTGTTGCTGAAAGCCTGAATGAAGGACCTTGGAAAGACAAAAGAGAACATAGAAAAGATAAGAGCCCTATTAAGATCAATGGAAAGATCTTTCCAGATGAAGTTCCTACAATCTCTAAAGAAACAAGAGAAACAGGTGGTGCTCTTTGGGACATCTTTCGGAGAGAGGATACTGAAAAGTTAGAAGCATATCTAAGAAAACACACTAAAGAATTTAGACATACTTATTTATCTCTAGTTGAACAGGTTGTCCATCCAATTCATGACCAATGTTTTTATTTGACTGTGGAGCACAAGAAGAAGCTGAAGGAGGAATATGGTGTAGAACCTTGGACATTTGAGCAGAAACTTGGAGAAGCAGTGTTTATTCCTGCTGGATGCCCTCACCAAGTCAGGAATCTCAAGTCATGCACAAAAGTTGCTGCAGACTTTGTGTCCCCAGAAAATGTGCACGTGTGCATGCGTTTAACTGATGAGTTCCGTTGTCTTCCTAAGAATCATAAGGCCAGAGAAGATAAACTTGAGATAAAGAAGATGATAGTCTATGCTGTTGACCAAGCTGTCAAAGAATTAGAAGCTGTAGTTAGGTGTTCGTGA 1815 0.4094 MLGKSCSEIEIPQTPCDDDERIYCDHCATSIIDLHRSCPKCSFEICLSCCQEIRNGSISPRSEMKFQYVFKGYDYMHGGDPLPVSCDDLGTSESHVELSTKWKANSDGSVRCAPKEWGGCGGCVLELKCMLPNGWISDLEARARHMQKFFCKIEQTALQKEAASSCNSVIRAAFRDGTNDNNIYYPASNDLVKEGLFHFQKHWINGEPVIVRDVLKQGTGLSWEPMVTWRALSEKLDSGISSNMSQVKAIDCLTSCEVEINTLKFFKGYTEGRTYNNLWPEMLKLKDWPPSDKFENLLPRHCDEFIRCLPFQEYSDPRAGILNLAVRLPNHILKPDLGPKTYIAYGIREELGRGDSVTKLHCDMADAVNILTHTSEVILTDEQHSVISQVKKAHKAQDEKERGAQASVAESLNEGPWKDKREHRKDKSPIKINGKIFPDEVPTISKETRETGGALWDIFRREDTEKLEAYLRKHTKEFRHTYLSLVEQVVHPIHDQCFYLTVEHKKKLKEEYGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAADFVSPENVHVCMRLTDEFRCLPKNHKAREDKLEIKKMIVYAVDQAVKELEAVVRCS 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi62g00100 604 CDD cupin_RmlC-like 491 539 - -
Sebi62g00100 604 ProSiteProfiles JmjC domain profile. 317 567 IPR003347 -
Sebi62g00100 604 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 3 599 IPR045109 GO:0032454|GO:0033169
Sebi62g00100 604 Pfam JmjC domain, hydroxylase 454 550 IPR003347 -
Sebi62g00100 604 FunFam Transcription factor jumonji domain-containing protein 180 576 - -
Sebi62g00100 604 SMART cupin_9 298 567 IPR003347 -
Sebi62g00100 604 MobiDBLite consensus disorder prediction 414 429 - -
Sebi62g00100 604 SUPERFAMILY Clavaminate synthase-like 200 602 - -
Sebi62g00100 604 MobiDBLite consensus disorder prediction 394 429 - -
Sebi62g00100 604 Gene3D Cupin 183 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi62g00100 Sebi-Chr62 1079867 1083008 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Sebi62g00100 JmjC 2.5e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi62g00100 K15601 - gmx:100801772 984.941