Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi62g00094 ATGCTTCACAACAACACCACCACCAACCCTGCTGGCTTAGGGTATTATTTCATGGAGGACAACAACAACAACAATGGAAGCTCCTCCTCCTCTTCTTCTGCTGTTAAGGACAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCTGCCTATGTCAATTGTCAAAAGGTTGGAGCACCACCTGAAGTGGTGGCGAGGTTGGAAGAAGCGTGTGCATCTGCTGTGAGGTTGGCAGGTGATACAGTTGGATCAGGCTGCATAGGTGAAGATCCAGCTTTAGATCAGTTCATGGAGGCTTACTGTGAGATGCTCACTAAGTATGAGCAAGAACTTTCTAAACCCTTAAAGGAAGCCATGCTCTTCCTTCAGAGGATAGAGTGTCAGTTCAAAAATCTCACTATTTCTCCTTCCGATGTTGGTTGTAATGAGGGTACTGATAAGAATGGATCATCTGAAGAGGATGTTGATCTATACAACATCATAGATCCTCAGGCAGAGGACAGGGAATTAAAGGGTCAGCTTTTGCGTAAGTACAGTGGATACTTGGGGAGTCTGAAGCAGGAATTCATGAAGAAGAGGAAAAAAGGAAAGCTTCCTAAAGAAGCAAGGCAAAAACTTCTTGAATGGTGGAGCAGACATTACAAATGGCCTTACCCATCTGAATCGCAGAAGGTGGCTCTGGCAGAGTCGACAGGTCTGGATCAGAAGCAAATAAACAACTGGTTTATTAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGACATGCAGTTTGTGGTGGTGGATCCAAGCCATCCACACTATTACATGGATCACAATGTTCTCACCAATCCCTTTCCCATGGATCTCCCCAACACCATGCTCTAG 870 0.4563 MLHNNTTTNPAGLGYYFMEDNNNNNGSSSSSSSAVKDKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAVRLAGDTVGSGCIGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRIECQFKNLTISPSDVGCNEGTDKNGSSEEDVDLYNIIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQKLLEWWSRHYKWPYPSESQKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHPHYYMDHNVLTNPFPMDLPNTML 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi62g00094 289 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 46 259 - -
Sebi62g00094 289 ProSitePatterns 'Homeobox' domain signature. 228 251 IPR017970 GO:0000981|GO:0006355
Sebi62g00094 289 SMART KNOX1_2 33 77 IPR005540 GO:0003677|GO:0005634
Sebi62g00094 289 Pfam KNOX2 domain 87 134 IPR005541 GO:0003677|GO:0005634
Sebi62g00094 289 SMART HOX_1 192 257 IPR001356 GO:0003677
Sebi62g00094 289 SMART KNOX2_2 84 135 IPR005541 GO:0003677|GO:0005634
Sebi62g00094 289 ProSiteProfiles ELK domain profile. 170 190 IPR005539 GO:0003677
Sebi62g00094 289 FunFam Homeobox protein knotted-1-like 2 195 257 - -
Sebi62g00094 289 Pfam ELK domain 170 191 IPR005539 GO:0003677
Sebi62g00094 289 Pfam KNOX1 domain 34 73 IPR005540 GO:0003677|GO:0005634
Sebi62g00094 289 Pfam Homeobox KN domain 210 249 IPR008422 GO:0003677|GO:0006355
Sebi62g00094 289 SUPERFAMILY Homeodomain-like 192 268 IPR009057 -
Sebi62g00094 289 CDD homeodomain 202 254 IPR001356 GO:0003677
Sebi62g00094 289 ProSiteProfiles 'Homeobox' domain profile. 190 253 IPR001356 GO:0003677
Sebi62g00094 289 Gene3D - 195 257 - -
Sebi62g00094 289 SMART ELK_2 170 191 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi62g00094 Sebi-Chr62 1024916 1029101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi62g00094 35 289 Homeobox Transcription Factor Family AT1G62360 77.863 3.91e-133 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Sebi62g00094 KNOX2 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi62g00094 - - gmx:100805837 500.745