Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi62g00089 ATGCTATCGCCCCTCTTGGAATTTAATTACCGTTATTTGCAGAATGTCCATCAAGGATACGTCACTGAAACCTTAATAAGAAAGAAGGGTGGCGGTTCAAGCAAAGCTCCAGTCGAGAATTCAGCAAATAATGGCAGTGTGGAACTGGATTCGTCAGCGTCATTGAAGAGAGCCCACGAGCTGAAAGAAGAGGGAAACGGAAGATTCCAGAATAAGGACTATGCGAGTGCTCTTCAACAATACGACAATGCTCTTCGTCTAACCCCCAAAAACCACCCGGACAGGGCCGTGTTTCACAGCAATAAGGCCGCGTGTTTGATGCAAATGAAGCCCATTGATCATGAAAGTGTCATTGCCGAATGCACCATGGCGCTTCAGGTCCAGCCCCAATTTGTTCGAGCCCTCCTTCGAAGGGCACGCGCGTACGAGAGCGTAGGCAACAACGAAATGGCGCTGCGAGACGTAAAAGCCTTGCTGGCAGCTGAACCTACTCACTCCGATGCTTTGGAGATTGCTCACAGATTGAGAACCGCATTGGAACCTCGCCCTTCCCCTGCTGCACTCGGCGTTTCCGCCGTTCGTGCAAGAAAAGAAGAGGTTGAGATTCGGTCTAGGCCGTTGAAGCTTGTTTATGATCATGACATCAGGCTTGCCCAGATGCCAATGAATTGCAGTTTTAGGGCACTGAGAGACACAGTAAGAAAAAAATTCCCATCTTCTAATTCAGTTCTGATAAAGTATAAGGATAATGACGGTGATTTGGTGACTATAACCTCCACTGATGAACTCAGAATGGCTGAGTCTAGTGTTGATACCCTAAGCGATTCAATTGGGATGCTGAGACTTAATATAGTTGAAGTTAATTCTGAGCAGGAGCCACCTATATTGGAAGAACAAGAACAAAAACCTGTTGAGAGTGGTTCTATTTCTAATGATATTGATACCAAGGTTGTTAAGGTGGAGAAAGATACTACTAAGGAAGATACTGAATCCAAGGAAATAGAGATGGATGATTGGATGTTTGAATTTGCTCAGTTTTTCCGTTCTCGTGTTGGCATTGATGGGGATGCTCATGTTGACTTGCATGAGCTTGGGGTGGAGTTTTGTTCAGAGGCACTTGAGGAATTGGTAACTGGTGAGGAGGCTCAGGGTCTCTTTGATAAAGCTGCTTTGAAGTTTCAGGAAGTGGCTGCATTGGCATTTTTCAATTGGGGAAATGTGCACATGTGTGCTGCTAGGAAGCGTGTGCCTTTAGAAGGGAAGGAGAAGGAGGTAGTTGCAGAAGGGCTTCAAGTTGCTTTTGATTGGGTTAAGGAAAAATATTGTTTGGCAAGAGAGAAGTATGAGCAAGCACTCTTGATTAAACCAGACTTTCATGAGGGATTATTGGCTTTAGGGCAGCAACAATTTGAATTGGCTAAGCTTCATTGGTCTTTTGTGCTTGCTAAGAAGATAGATTTATCAGGCTGGGATTCCAGGGAGACACTTCAGCTTTTTGACAGTGCAGAGCAGAAGATGAAAGGTGCAACTGAGATGTGGGAGAAGCTGGAAGAACAGAAAGTAAATGAGCTAAAGGACCCGAAGAAAGAAGAACTACTGAGAAGAAAGAAAAAACAGGGAGATGAATCCTCTGGTGTTGGGGGTCAGGATGATGGTGTATCTGCAGAAGAAGCTGCACAGCATGCAGCTGTGATGAGATCGCAGATTCATCTTTTCTGGGGTAATTTGTTGTTTGAACGATCCCAAGTAGAATGCAAATTGGGAATGGCTGATTGGAAGAAAAACCTGGATGCTGCTATTGTGCATTTTAAGCTTGCTGGAGCTTCAGAGGCCGATGTTTCAATGGTTCTAAAGAATCATTGCTCCAATGGAGAAGTAAAAGGATCAAGAACCCACAACACAATTACGCTAGTAGAATAG 1920 0.4464 MLSPLLEFNYRYLQNVHQGYVTETLIRKKGGGSSKAPVENSANNGSVELDSSASLKRAHELKEEGNGRFQNKDYASALQQYDNALRLTPKNHPDRAVFHSNKAACLMQMKPIDHESVIAECTMALQVQPQFVRALLRRARAYESVGNNEMALRDVKALLAAEPTHSDALEIAHRLRTALEPRPSPAALGVSAVRARKEEVEIRSRPLKLVYDHDIRLAQMPMNCSFRALRDTVRKKFPSSNSVLIKYKDNDGDLVTITSTDELRMAESSVDTLSDSIGMLRLNIVEVNSEQEPPILEEQEQKPVESGSISNDIDTKVVKVEKDTTKEDTESKEIEMDDWMFEFAQFFRSRVGIDGDAHVDLHELGVEFCSEALEELVTGEEAQGLFDKAALKFQEVAALAFFNWGNVHMCAARKRVPLEGKEKEVVAEGLQVAFDWVKEKYCLAREKYEQALLIKPDFHEGLLALGQQQFELAKLHWSFVLAKKIDLSGWDSRETLQLFDSAEQKMKGATEMWEKLEEQKVNELKDPKKEELLRRKKKQGDESSGVGGQDDGVSAEEAAQHAAVMRSQIHLFWGNLLFERSQVECKLGMADWKKNLDAAIVHFKLAGASEADVSMVLKNHCSNGEVKGSRTHNTITLVE 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi62g00089 639 Coils Coil 499 519 - -
Sebi62g00089 639 ProSiteProfiles TPR repeat profile. 58 91 IPR019734 GO:0005515
Sebi62g00089 639 SUPERFAMILY CAD & PB1 domains 205 293 - -
Sebi62g00089 639 PANTHER PROTEIN CLMP1 196 627 IPR044517 -
Sebi62g00089 639 MobiDBLite consensus disorder prediction 36 51 - -
Sebi62g00089 639 Pfam PB1 domain 205 286 IPR000270 GO:0005515
Sebi62g00089 639 CDD PB1 207 284 - -
Sebi62g00089 639 SMART tpr_5 132 165 IPR019734 GO:0005515
Sebi62g00089 639 SMART tpr_5 96 131 IPR019734 GO:0005515
Sebi62g00089 639 SMART tpr_5 58 91 IPR019734 GO:0005515
Sebi62g00089 639 SUPERFAMILY TPR-like 58 476 IPR011990 GO:0005515
Sebi62g00089 639 MobiDBLite consensus disorder prediction 527 544 - -
Sebi62g00089 639 Gene3D - 204 283 - -
Sebi62g00089 639 Gene3D Tetratricopeptide repeat domain 55 180 IPR011990 GO:0005515
Sebi62g00089 639 MobiDBLite consensus disorder prediction 527 557 - -
Sebi62g00089 639 MobiDBLite consensus disorder prediction 29 53 - -
Sebi62g00089 639 ProSiteProfiles PB1 domain profile. 204 287 IPR000270 GO:0005515
Sebi62g00089 639 SMART PB1_new 204 287 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi62g00089 Sebi-Chr62 947636 950303 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi62g00089 46 179 Calmodulin-binding Proteins AT3G25230 25.517 8.20e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi62g00089 K26538 - qsa:O6P43_011971 716.072