Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi62g00072 ATGAAGAAAGACGCCGCAGTGACACCGTTTGGCGCGTCGTCGCGGTTGCAGTTCTTCGTCCGCATGATGCCGAAGGGCAACAGCATGGTGATGCAGTGTTCGGGAGAAGATACCGTGAAATCGGTTCACGAAAGGATCGAGAAGATGATCAGCATTCCGGTTTGCCAGCAGAGGCTAATATACGAAGGGAAGCAACTCCACTGGGAGCAGAGTCTTGACGAATGCGGCATCCAAAACGACGCGAATCTTCAATTGATTGGGCACTTGCGTAGTGGTGGTTGCCCTCAAGTGTGGTACGACATTGAAGAAATTGATTCCCTCATTTGCGGTTTATGCAGAGGCGAAGGGGCGCCCGAAGCTTCGAAGATCGTCGTCGATCTCAACAAGTACGTGATCAACGTCAATGAGTACTGTGTCGTTCAGTTCTTTTATGCTTTCATGTCCTCCAACATTCCCTCAGCGTTGGTCATGCTCTATGTGTCCCCTTACGAAGGTAACAAGGACCTTGCTGATACTGTTATTAGAAAATTTTTTAGCAGTTGCTGTGCTAGCTCATCTAAAGAGTTGAAGTTTCGTTCCCTTTCTATGGTGTTGGAGATTTGTAGACTGCTTAGACATGTGGTGGAGTGTTTTGATTCTTTGTATATCGCTTGCCGTGGTTATTTCAGGATATTGTTTGAGGCTGCTGGTGATCGTTGCTTTGACATTAGGAATTTCCATCAAGATATGTTCCCCTTTGTTTCTGAGCTTGCTGATTGTATTTTGAGGGATTTGGAGTTGAGTATATTTTGCCCCACCGGCATATTGCCGAGGGGGAACCATTTTCAGGATTTCACAGTTTTGTTAGCCCCTTTAAGGAATGAAATCAGAAAGCGGCAAGCTTTGAAGGGTTCTGTGACTGATGAAAATTGCCATGAGGAGCACCCTTTGTTTGAAAGGGAGGCTGATCACATTCGAATTATATATATTAAGTTACTGATCACAATGGATGACTGCCTTGGGGCCCTGGAGCATTGCTTGGCTGAGGAGGAAGAAGAGGGCTATTGGGGGTGGTCTTGGTATCTTTCCATGTTGAAGGAATTGTATCATATCTCTAAGCTCTATGATGGCACCGAAGACATGTTTTGGAGAGTCTTGATGCGTCGAAGAAGTATGCTGTCTCTATTAGTTGTTTGGAATGCAGGTAGAACCAATGATCATCGGTGGGTTCTAGAGAACAAAAGTGTGACCAAATTTGAATCTAGGAGGCATTTGGCGATGATACTCTTCTCTGACATGAGAAAAGACCATGGGAGGTTGCATCATATGCTTATTGACAGGTCTGAATTGTTGGCTGAATCTTTCCGGTGCATAGCAATGCCTAAATCTCTGCATGCTGATCTGTTTGTGGAATTCAAGAATGAGGAAGCTACAGGAGCGGGTGTACTGAGGGAGTGGTTTGTTTTGGTGTGTCAAGCAATATTTAATCCACTAAATGCTCTTTTTGAGGCATGCCCAAATGATTGCCGGAGATTTTTCCCTAATCCTGCATCTAAGGTAAATCCTCTGCACCTTGAGTACTTCAGCTTCTCTGGTCGTATTATTGCATTGGCTTTGAAGAATAAAGTACAAGTGGATGCATTAGGACTGACGTTTGTTAGAGAGGTGGAGGAATTTGGTTACAGGAAAGTGATTGAGCTTTGCCCTGGTGGGAATACTCTTGTAGTGAATAGTAAGAACAGGGAAAAGTATGTTGATCTTCTTATACAGAATCGTTTTGTAACATCCATATCTGAGCAGGTATCACATTTTGCCAAGGGTTTTTGTGATATTCTTTCAAACTCAAGTCTCCAGCAGTTCTTTCAAAGTTTAGAGCTTGAAGATCTTGATTGGATGCTGTATGGGAGTGAAAAGGCCATCTCTGTTAGAGATTGGAGGGCACATACTGAGTATATTGGCTATAAAGAGACTGATTGTCAGATATCTTGGTTTTGGAAGGAATAA 1983 0.4372 MKKDAAVTPFGASSRLQFFVRMMPKGNSMVMQCSGEDTVKSVHERIEKMISIPVCQQRLIYEGKQLHWEQSLDECGIQNDANLQLIGHLRSGGCPQVWYDIEEIDSLICGLCRGEGAPEASKIVVDLNKYVINVNEYCVVQFFYAFMSSNIPSALVMLYVSPYEGNKDLADTVIRKFFSSCCASSSKELKFRSLSMVLEICRLLRHVVECFDSLYIACRGYFRILFEAAGDRCFDIRNFHQDMFPFVSELADCILRDLELSIFCPTGILPRGNHFQDFTVLLAPLRNEIRKRQALKGSVTDENCHEEHPLFEREADHIRIIYIKLLITMDDCLGALEHCLAEEEEEGYWGWSWYLSMLKELYHISKLYDGTEDMFWRVLMRRRSMLSLLVVWNAGRTNDHRWVLENKSVTKFESRRHLAMILFSDMRKDHGRLHHMLIDRSELLAESFRCIAMPKSLHADLFVEFKNEEATGAGVLREWFVLVCQAIFNPLNALFEACPNDCRRFFPNPASKVNPLHLEYFSFSGRIIALALKNKVQVDALGLTFVREVEEFGYRKVIELCPGGNTLVVNSKNREKYVDLLIQNRFVTSISEQVSHFAKGFCDILSNSSLQQFFQSLELEDLDWMLYGSEKAISVRDWRAHTEYIGYKETDCQISWFWKE 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi62g00072 660 ProSiteProfiles Ubiquitin domain profile. 16 92 IPR000626 GO:0005515
Sebi62g00072 660 SMART hect_3 451 660 IPR000569 GO:0004842
Sebi62g00072 660 Gene3D - 12 98 - -
Sebi62g00072 660 ProSiteProfiles HECT domain profile. 453 660 IPR000569 GO:0004842
Sebi62g00072 660 SUPERFAMILY Ubiquitin-like 13 93 IPR029071 -
Sebi62g00072 660 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 17 540 - -
Sebi62g00072 660 Gene3D Hect, E3 ligase catalytic domain 538 589 - -
Sebi62g00072 660 PRINTS Ubiquitin signature 48 68 IPR019956 -
Sebi62g00072 660 PRINTS Ubiquitin signature 69 90 IPR019956 -
Sebi62g00072 660 PRINTS Ubiquitin signature 27 47 IPR019956 -
Sebi62g00072 660 Gene3D Hect, E3 ligase catalytic domains 437 537 - -
Sebi62g00072 660 Pfam Ubiquitin family 19 89 IPR000626 GO:0005515
Sebi62g00072 660 Pfam HECT-domain (ubiquitin-transferase) 534 659 IPR000569 GO:0004842
Sebi62g00072 660 SUPERFAMILY Hect, E3 ligase catalytic domain 418 659 IPR035983 GO:0004842
Sebi62g00072 660 Gene3D Hect, E3 ligase catalytic domains 590 622 - -
Sebi62g00072 660 SMART ubq_7 16 88 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi62g00072 Sebi-Chr62 734144 737068 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi62g00072 16 120 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.481 2.95e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi62g00072 - - gmx:100796470 697.582