Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi62g00071 ATGGGCAAAATTGGGGGCGACGGTGGCTCCACCACCGATCACCACCGCCACTCCTCCAAGCGCAAATTTGAGGACTACAGCTCCAGCTTCGACGATGAAGACAACGACAACGCCAATTCCTTCGACCTAGTTTCCGTGAGGACGAAGAAAGACGCCGAAGCGACACCGTTTGGCGCGTCGTCGCGGTTGCAGTTCTTCGTCCGCATGATGCCGAAGGGCAACAGCGTGGTGATGCAGTGTTCGGGAGAAGAGACCGTGAAATCGGTTCACGAAAGGATCGAGAGGATGACCGGAATTCCTGTTCGCGAGCAGAGGCTAATATACGAAGGGAAGCAACTCCGTTGTGAGCAGAGTCTGCGCGAGTGCGGCATTCAAAAAGACGCGAATCTCCAATTGGTTGGGCACTTACGCAGTGGGGAGCACCCACCTTCATGTTCATGGCATGATGACGCTAACCTTCATAGATTTCTTCAGTTATTGAGCAAAACGGATAAGTGCCTTCATACCTTGGAGAATTGCTTTGCTAACAAGGAGCCGTGGGAAGGGGATGAGGATGTTGCCAATACGTGTTCGATGTTACTTATCATCCTGAAGGATTTGCATGAAATCTCTAAGCACTATGATGGCGCAGAAGACAAGTTTTGGAGTGTTTTGATGCATCGAAGAAGTTTGCTGTCTTTATTAATTGTTCGGTTTGCAAAGAGAACCGATGATAATCAGTGGGTTTTTGAGAAAAAATGTGTGACCGATTTTGAATGTAGGAGGCATTTGGCGATGATGCTCTTCCCTGATGTAGAAGAAGACTTTGAGGATTTGCATGAGATGCTTATTGACAGGTCTCAGTTGTTGGCTGAATCTTTCGAGTACATAGCAGAAGCGGAGCCTGAATCTCTGCACACTGGTCTTTTTATTAAATTCAAGAATGAGGATGCTTCAGGACCGGGTGTACTGAGGGAGTGGTTTTTTTTGGTGTGTCAAGCATTATTTAATCCGCTAAATGCTCTTTTTGAGGCATGCCCAAATGACCGCAGGAGATTTTTCCCAAATCCTGCATCTAAGGTACATCCTCTGCACCTTGAGTACTTCAGCTTCTGTGGTCGTATTATTGCATTGGCTTTGATGAATAAGGTGCAAGTGGGTATTGCTTTTGATCGTGTGTTTTTCATGCAATTGGCTGGAAACTGTATTACTTTGGAAGACATACAAGATGCAGATCCTTACTTGTATAGTAGCTGCAAGCAAATATTGGAGATGGATGCTAATTTCATTGATTCAGATGCATTAGGACTGACGTTTGCTAGAGAGGTGGAGGAATTTGGATACATGAAAGTGATTGAGCTTTGCCCTGGTGGGAAAACTCTTGTAGTGAATAGTAAGAACAGGGAAAAGTATGTTGATCTTCTTATACAGAATCGTTTTGTAACATCCATATCTGAGCAGGTATCACATTTTGCCAAGGGTTTCTGTGATATTCTTTCAAACTCAAGTCTCCAGCAGTTCTTTCAAAATTTAGAGCTTGAAGATCTTGATTGGATGCTGCATGGGAGTGAGAAGGCGATCTCTGTTAAAGATTGGAGGGAACATACTGAGTATATTGGCTATAAAGAGACTGATCGTCAGATATCTTGGTTTTGGGAGGCAGGAATGGCTTTATTGGGCAACAGGTATCTACCACTTGATGCCCTATTGTTGGGAGAATGTCAGCAGAACAAAGGAAGATCTGCAGAACCTGATGATCGCCTGCCCTCATCTCACACATGCTTTTACAGGCTGTGTATCCCTCCGTATTCATCTAAGGCTGTTATGCAAGATCGTCTTGGAGTCATCACTCATGAACACATTGGTTGCAGTTTTGGGACTTGTTGA 1866 0.4486 MGKIGGDGGSTTDHHRHSSKRKFEDYSSSFDDEDNDNANSFDLVSVRTKKDAEATPFGASSRLQFFVRMMPKGNSVVMQCSGEETVKSVHERIERMTGIPVREQRLIYEGKQLRCEQSLRECGIQKDANLQLVGHLRSGEHPPSCSWHDDANLHRFLQLLSKTDKCLHTLENCFANKEPWEGDEDVANTCSMLLIILKDLHEISKHYDGAEDKFWSVLMHRRSLLSLLIVRFAKRTDDNQWVFEKKCVTDFECRRHLAMMLFPDVEEDFEDLHEMLIDRSQLLAESFEYIAEAEPESLHTGLFIKFKNEDASGPGVLREWFFLVCQALFNPLNALFEACPNDRRRFFPNPASKVHPLHLEYFSFCGRIIALALMNKVQVGIAFDRVFFMQLAGNCITLEDIQDADPYLYSSCKQILEMDANFIDSDALGLTFAREVEEFGYMKVIELCPGGKTLVVNSKNREKYVDLLIQNRFVTSISEQVSHFAKGFCDILSNSSLQQFFQNLELEDLDWMLHGSEKAISVKDWREHTEYIGYKETDRQISWFWEAGMALLGNRYLPLDALLLGECQQNKGRSAEPDDRLPSSHTCFYRLCIPPYSSKAVMQDRLGVITHEHIGCSFGTC 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi62g00071 621 Gene3D Hect, E3 ligase catalytic domain 394 476 - -
Sebi62g00071 621 SMART hect_3 292 619 IPR000569 GO:0004842
Sebi62g00071 621 MobiDBLite consensus disorder prediction 9 28 - -
Sebi62g00071 621 Pfam Ubiquitin family 66 137 IPR000626 GO:0005515
Sebi62g00071 621 Gene3D Hect, E3 ligase catalytic domains 276 508 - -
Sebi62g00071 621 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 190 619 - -
Sebi62g00071 621 SUPERFAMILY Hect, E3 ligase catalytic domain 269 606 IPR035983 GO:0004842
Sebi62g00071 621 MobiDBLite consensus disorder prediction 1 39 - -
Sebi62g00071 621 SMART ubq_7 63 135 IPR000626 GO:0005515
Sebi62g00071 621 Gene3D Hect, E3 ligase catalytic domain 519 551 - -
Sebi62g00071 621 Gene3D Hect, E3 ligase catalytic domain 552 619 - -
Sebi62g00071 621 PRINTS Ubiquitin signature 74 94 IPR019956 -
Sebi62g00071 621 PRINTS Ubiquitin signature 95 115 IPR019956 -
Sebi62g00071 621 PRINTS Ubiquitin signature 116 137 IPR019956 -
Sebi62g00071 621 Pfam HECT-domain (ubiquitin-transferase) 323 547 IPR000569 GO:0004842
Sebi62g00071 621 Pfam HECT-domain (ubiquitin-transferase) 576 612 IPR000569 GO:0004842
Sebi62g00071 621 Gene3D - 58 152 - -
Sebi62g00071 621 SUPERFAMILY Ubiquitin-like 60 139 IPR029071 -
Sebi62g00071 621 ProSiteProfiles HECT domain profile. 294 621 IPR000569 GO:0004842
Sebi62g00071 621 ProSiteProfiles Ubiquitin domain profile. 63 139 IPR000626 GO:0005515
Sebi62g00071 621 CDD HECTc 273 619 IPR000569 GO:0004842
Sebi62g00071 621 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 394 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi62g00071 Sebi-Chr62 726135 730111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi62g00071 63 144 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.585 5.92e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi62g00071 - - gmx:100796470 676.396