Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi62g00058 ATGGTTTCGCTGGAGGATTCTCGCTCGAATTCGAGCCGTTTCCCCTTAACGCGAACCTATCAGTATCAGTCCTCCCTTTCCTCCAAAACGCAGCGTCACATCGGAAGGTCCATGCGCACTATACGCTCCAATTTCTTCCAAGATGACAACAGCAGACCTGCTCCTTCACCGAGAAATCCACGTGTCTATCGGAAAACCTTACCGACTCCGTCGTCGACCTCCGCCTCGTCGACCTCGCTTCTCGGAACAATAAATCCGTCAAGTCCTCCGGCGCCTCCGAGGAGGACCTCCTCGATCTCTCCCAGGCCTTCAGCGATTTCTCCGCCTGCAGCAGCGACATCTCCGGCGAGCTGCAGCGTCTGGCGAGCCTGCCTTCGCCGGAATACGGAGAACTTCTCCACGGAGATTATTGAGAGTATCTCGCCGGAGGATCTTCAGCCGACGGTGAAGCTTTGCATTGACGGGCTTCAGTCGCCGTCGGTGGCCGTGAAGCGATCGGCTGCGGCGAAGCTGAGGCTTCTGGCGAAGAATCGCGCTGATAACAGAGTTCTGATCGGCGAGTCCGGTGCGGTCGCTGTTCTGGTTCCTCTGCTTCGCTGCAGCGATCCGTGGACGCAGGAGCACGCAGTGACGGCGCTGCTGAACCTGTCACTTCACGAGGATAACAAGAAGCTGATAACCAATGCGCGGAGCCGTGAAGTCGCTGATTTATGTGCTGAAGACAGGGACGGAGACTTCGAAGCAGAACGCGGCGTGCGCGTTGCTGAGTCCTTGCGGGGAAGAAGCGCGCTTACGACGCTCTATAAGCTGTGCTCCGTGAAGCAGAACAAAGAGAGGGCGGTGAGCGCCGGTGCTGTGAAGCCGCTGGTGGAGCTGGTGGCGGAGCAAGGGAACGGCATGGCGGAGAAGGCAATGGTAGTGCTCAACAGCTTAGCAGGGATTCAGGAAGGGAAAGATGCGATTGTGGAAGAAGGTGGAATAGCTGCTCTTGTGGAAGCCATTGAGGATGGTTCTGTGAAGGGAAAGGAGTTTGCTGTTTTGACGCTTCTGCAACTGTGTGCTGACAGTGTCAGAAACAGAGGGTTTCTCGTGAGAGAGGGTGGGATTCCTCCTCTTGTTGCTCTTTCCCAAACTGGGACCCTCGAGCTAAGCACAAGGCTGAAACGCTACTTCGATATTTGA 1182 0.5626 MVSLEDSRSNSSRFPLTRTYQYQSSLSSKTQRHIGRSMRTIRSNFFQDDNSRPAPSPRNPRVYRKTLPTPSSTSASSTSLLGTINPSSPPAPPRRTSSISPRPSAISPPAAATSPASCSVWRACLRRNTENFSTEIIESISPEDLQPTVKLCIDGLQSPSVAVKRSAAAKLRLLAKNRADNRVLIGESGAVAVLVPLLRCSDPWTQEHAVTALLNLSLHEDNKKLITNARSREVADLCAEDRDGDFEAERGVRVAESLRGRSALTTLYKLCSVKQNKERAVSAGAVKPLVELVAEQGNGMAEKAMVVLNSLAGIQEGKDAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCADSVRNRGFLVREGGIPPLVALSQTGTLELSTRLKRYFDI 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi62g00058 393 Pfam Armadillo/beta-catenin-like repeat 180 217 IPR000225 GO:0005515
Sebi62g00058 393 MobiDBLite consensus disorder prediction 42 114 - -
Sebi62g00058 393 PANTHER U BOX DOMAIN-CONTAINING 90 229 - -
Sebi62g00058 393 Gene3D - 129 234 IPR011989 -
Sebi62g00058 393 MobiDBLite consensus disorder prediction 65 85 - -
Sebi62g00058 393 SUPERFAMILY ARM repeat 124 379 IPR016024 -
Sebi62g00058 393 SMART arm_5 178 218 IPR000225 GO:0005515
Sebi62g00058 393 SMART arm_5 314 354 IPR000225 GO:0005515
Sebi62g00058 393 SMART arm_5 272 313 IPR000225 GO:0005515
Sebi62g00058 393 Gene3D - 235 388 IPR011989 -
Sebi62g00058 393 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 189 231 IPR000225 GO:0005515
Sebi62g00058 393 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 284 326 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi62g00058 Sebi-Chr62 568405 570272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi62g00058 126 391 U-box Gene Family AT2G23140 39.016 6.16e-49 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi62g00058 - - gmx:100806768 367.081