Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi62g00054 ATGCAAACGTCCCAGAAACACCCCACTTCAGCTGGTATCCATTTGTACCACCAGCAGCCTATGCAAGACATTGATCCCTACACTCAATACCAAATATTACAAAGCAGTGCATGCCATGACAGTAGCAGCCAGGGAACCAATGTTTCTTTTGAAGCCTGCAAGGAGCAATACTTCACCCTGGAATCATCCACAGGAACCACTGGTCTAGGTTGTGATTCTCCTTCCTATGCTAGTGTATCATCCAACAGAGGTCCTTTTTCTCCACAAGCTTCTCATTCTTACCATTCAGATCAGCATCAGTCATCTGACAACACCTATGGATCACCAATAAGTGTACACTCTAGTGCTGATGATAGCTATGAGTTGAAGCACAAACTTAGAGAACTTGAGATTTCATTGTTGGGGCCTGAGTCAGATATTGTTGACAGCTGTAACGGCTGCATCAAGGGTGGCCTCCACGGAGCATCTTCAACAGCTAAATATAATTGGTCTCAGATTGAAGAAATGATTCCAAAGTTAGACTTGAGAGAAGTCCTTATTCGGTGTGCACAAGCTGTGTCAGATGGTGATGTTCAAACAGCACTAGGATGGATGGATAATATATTGGGAAAGATGGTATCAGTTGCTGGGGATCCTATCCAAAGGTTAGGTGCTTACATGTTGGAGGGTCTAAGAGCAAGGTTGGAATCATCAGGGAGTTTAATCTACAAGGCCTTGAAGTGTGAACAACCAACAAGCAAGGAACTCATGAGTTACATGCACATCATGTATCAGGCTCTTGCATGTAGGCCAGGTGGACCTCCATTCATTCGTGTAACTGGTGTTGATGATTCACAATCATTTCATGCTAGGGGTGGAGGACTTCATATTGTAGGAAAAAGGCTCTCAGATTATGCCAAGTCTTGTGGGGTGCCATTTGAGTTCCACATTGCTGGCATGTCTGGCTGTGAGGTTGAACTAGAAAACCTTGTAGTTATGCCTGGGGAAGCTCTAGCTGTGAATTTCCCTTTCATTTTGCACCACATGCCAGATGAGAGTGTGAGCACAGAGAACCATAGAGACAGGCTATTGAGATTGGTAAAGAGTTTGTCACCCAAGGTTGTGACCCTTGTTGAGCAAGAATCCAACACCAACACTTCACCATTTTTCCAAAGGTTTGTTGAGACTTTGGATTACTACACTGCTATGTTTGAATCAATAGATGTGGCCGTCCCCAGAGATGACAAGAAGAGGATTAGTGCAGAACAGAACTGTGTGGCTCGTGACATTGTCAACATGATAGCTTGTGAAGGGGCTGAGAGAGTGGAAAGGCATGAACTTTTTGGAAAATGGAGGTCAAGATTTTTAATGGCTGGTTTTGTACCATGCCCTTTGAGTTCTTCAGTGATGGGTTCAGTTAGGAATCTCTTGAAAGAATTCAATGAAAATTATAGGGTTGAACACACAGATGTTGCTCTCTATCTAGGTTGGAAGAACAGGGCTATGTGCACCTATTCTGCCTGGAGATGTTACTGA 1515 0.4383 MQTSQKHPTSAGIHLYHQQPMQDIDPYTQYQILQSSACHDSSSQGTNVSFEACKEQYFTLESSTGTTGLGCDSPSYASVSSNRGPFSPQASHSYHSDQHQSSDNTYGSPISVHSSADDSYELKHKLRELEISLLGPESDIVDSCNGCIKGGLHGASSTAKYNWSQIEEMIPKLDLREVLIRCAQAVSDGDVQTALGWMDNILGKMVSVAGDPIQRLGAYMLEGLRARLESSGSLIYKALKCEQPTSKELMSYMHIMYQALACRPGGPPFIRVTGVDDSQSFHARGGGLHIVGKRLSDYAKSCGVPFEFHIAGMSGCEVELENLVVMPGEALAVNFPFILHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFQRFVETLDYYTAMFESIDVAVPRDDKKRISAEQNCVARDIVNMIACEGAERVERHELFGKWRSRFLMAGFVPCPLSSSVMGSVRNLLKEFNENYRVEHTDVALYLGWKNRAMCTYSAWRCY 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi62g00054 504 ProSiteProfiles GRAS family profile. 166 502 IPR005202 -
Sebi62g00054 504 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 112 259 IPR005202 -
Sebi62g00054 504 Pfam GRAS domain family 257 502 IPR005202 -
Sebi62g00054 504 Pfam GRAS domain family 175 254 IPR005202 -
Sebi62g00054 504 MobiDBLite consensus disorder prediction 78 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi62g00054 Sebi-Chr62 532760 534406 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi62g00054 1 502 GRAS Transcription Factor Family AT4G17230 53.285 0.0 544
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Sebi62g00054 GRAS 6.8e-85 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi62g00054 - - gmx:100819190 827.009