Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi62g00042 ATGCTGATGGGCAGTGATCAAAGTCAACAACCATTGCTTTCAGCTTCAAGAGAACATTGTCATCTCAATGAGAAGAGTGAGCTACAGAGAAGAAGGCTCCAATATGACAGTGCTTCAGAGACACAGATCAATCACCAAGAACAAAATGATGTCCAAAATCCTCTACACCCTCAATGTATAGCTGCAAAATCAGATTTCAATTTCAAACAAGTGTTTTTGTTGTTTGCTGCCTACTTAGGTGGAGGTACCCTATGTTTCTTTTTCACTGAGTATCAGATCAAGGGTATAAAAACCAATGGGTTTCTTGATTCTGTTTACTTCTGTGTTGTTACTATGACTACTGTTGGATATGGAGATCTAGTGCCTAATAGCTCATTGGCAAAACTTCTTGCCTGCATTTATGTCTTCATTGGCATGGCCCTTGGTGGATTAATTCTTAGCAAGGCAGCAGATTACATTGTTGAAAAGCAGGAAAACTTATTGGTTGGAGCCATACACATGGGCTATAAAGTTGGTCATGGAGAGGTTCCCAAAGTGCTTGAAGCCAATAAAACCAAATACAAATTAATGCTAGCAGCAGCCACTCTTGTGGGGCTCATGATTGTTGGAATTATTTTTCTCTATTTTGTTGAAAATCTAGAATTTATGGATGCCTTGTATTTTGTTTGTTCAACAGTCACTACCTTGGGTTATGGGGATAAGAGCTTCTCAACTGCTGAGGGTCGTATTTTTGCAATTTTCTGGATATTGAGTGGTACCATTTGCTTAGCTCAGTTCTTTCTCTATCTTGCTGAACTATACACTGAAGGTAGACAAAAATCACTGGCAAAAATGGTTCTTTCTCGAAGATTGTCACTCTCAGATCTTGAGACAGCAGATCTTGATCAAGACAAAGTTGTTAGTGCTGCAGAATTCATTGTATACAAGTTGAAGGAAATGGGAAAGATAAGTGAAGAAGACATTGCTGTTGTGATGGAGAGCTTTAGAAAACTAGACTATGATAATTCAGGAACTTTAACAGAAGCTGATATCAGATTTTGTGAATCTTCTTAA 1053 0.3827 MLMGSDQSQQPLLSASREHCHLNEKSELQRRRLQYDSASETQINHQEQNDVQNPLHPQCIAAKSDFNFKQVFLLFAAYLGGGTLCFFFTEYQIKGIKTNGFLDSVYFCVVTMTTVGYGDLVPNSSLAKLLACIYVFIGMALGGLILSKAADYIVEKQENLLVGAIHMGYKVGHGEVPKVLEANKTKYKLMLAAATLVGLMIVGIIFLYFVENLEFMDALYFVCSTVTTLGYGDKSFSTAEGRIFAIFWILSGTICLAQFFLYLAELYTEGRQKSLAKMVLSRRLSLSDLETADLDQDKVVSAAEFIVYKLKEMGKISEEDIAVVMESFRKLDYDNSGTLTEADIRFCESS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi62g00042 350 PRINTS Two pore domain K+ channel signature 227 236 IPR003280 GO:0005267|GO:0016020|GO:0071805
Sebi62g00042 350 PRINTS Two pore domain K+ channel signature 110 138 IPR003280 GO:0005267|GO:0016020|GO:0071805
Sebi62g00042 350 Gene3D - 170 292 - -
Sebi62g00042 350 Gene3D - 49 161 - -
Sebi62g00042 350 SUPERFAMILY Voltage-gated potassium channels 64 155 - -
Sebi62g00042 350 SUPERFAMILY Voltage-gated potassium channels 182 281 - -
Sebi62g00042 350 Pfam Ion channel 81 154 IPR013099 -
Sebi62g00042 350 Pfam Ion channel 196 267 IPR013099 -
Sebi62g00042 350 SUPERFAMILY EF-hand 242 345 IPR011992 -
Sebi62g00042 350 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 68 321 IPR003280 GO:0005267|GO:0016020|GO:0071805
Sebi62g00042 350 ProSitePatterns EF-hand calcium-binding domain. 332 344 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi62g00042 Sebi-Chr62 405181 406437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi62g00042 3 350 Ion Channels AT5G55630 52.235 6.21e-121 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi62g00042 K05389 - gmx:100799492 461.455