Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi62g00021 ATGAACATCCCCGACGGGGTCACCATCAAAGTGCACGCTAAGGTGATCGAGGTTGAAGGTCCACGTGGCAAGCTGGTGCGTGACTTCAAGCACTTGAACCTCGATTTCCAACTCATCACCGACGAGAACGGCAACAAGAAGCTCAAGGTTGAATCATGGTTCGGATCTCGCAAAACCTCCGCCGCCATCCGAACCGCACTCAGCCACGTCGAGAATCTCATCACTGGCGTCACCAAAGGTTACCGCTACAAGATGCGTTTTGTCTATGCTCACTTTCCAATTAACGCTAGCATCACCAACAGCAACACTGCCATTGAGATCCGAAACTTCCTTGGCGAAAAGAAGGTGAGGAAAGTGGACATGCTCAACGGTGTCACTGTAGTTCGATCTGAAAAGGTCAAGGATGAGTTGGTTTTGGATGGAAATGACATCGAGCTTGTTTCTCGATCTTGTGCCCTCATTAACCAGAAATGCCATGTTAAAAACAAAGATATCCGGAAGTTCCTTGATGGTATCTATGTTAGCGAGAAGGGGACAATACTTGAAGAGTAG 552 0.4801 MNIPDGVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLITDENGNKKLKVESWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLNGVTVVRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLDGIYVSEKGTILEE 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi62g00021 183 SUPERFAMILY Ribosomal protein L6 81 177 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Sebi62g00021 183 Gene3D - 1 82 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Sebi62g00021 183 PIRSF RPL6p_RPL6a_RPL9e_RPL9o 1 180 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Sebi62g00021 183 FunFam 60S ribosomal protein L9 1 80 - -
Sebi62g00021 183 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 181 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Sebi62g00021 183 SUPERFAMILY Ribosomal protein L6 2 80 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Sebi62g00021 183 ProSitePatterns Ribosomal protein L6 signature 2. 156 177 IPR002359 GO:0003735|GO:0005840|GO:0006412
Sebi62g00021 183 Pfam Ribosomal protein L6 92 171 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Sebi62g00021 183 Pfam Ribosomal protein L6 3 80 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Sebi62g00021 183 FunFam 60S ribosomal protein L9 81 183 - -
Sebi62g00021 183 Gene3D - 83 183 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi62g00021 Sebi-Chr62 231027 232529 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi62g00021 1 183 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 84.783 5.61e-115 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi62g00021 K02940 - gmx:100306058 346.28