Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi62g00003 ATGGCTCCTAACCTGGAATGTCGTATGTACGAGGCGAAGTACCCGGAGGTGGACATGGCGGTGATGATACAGGTGAAGAACATAGCCGATATGGGTGCTTACGTTTCACTCCTTGAGTACAACAACATTGAGGGCATGATCTTGTTCTCTGAGCTCTCTCGCCGTCGGATTCGTAGCGTTAGCAGCCTCATCAAAGTGGGTCGCATCGAGCCTGTTATGGTCCTTCGTGTCGACAAGGAAAAGGGTTACATCGATCTCAGCAAGCGTAGGGTCTCAGAAGAAGACATCCAAGCCTGCGAAGAGAGGAGCTGTATGTTCATATTGGATGGCCTTTATATCGCAAATATGGTCATGCTTTTGAGTGCTCTCACTCGTGAGGTCAAGGAAGTTGGCCCTGATGGGCAAGAGGTGACCAAGGTGGTGCCAGCTGTATCTGAAGAAGTGAAGGATGCTCTTGAGGCAATGCGGAAGGCTGAAGCTGCTGGAAATGATGATTGCCCTGTGAAAATTAAACTTGTTGCTCCTCCACTTTATGTTCTTACCACACAGACCCTTGACAAGGAGCAAGGAATATTGGTTCTCAACAATGCCATTGTTTCTTGCACTGAATCAATAGAACAACACAAGGGTAAACTTGTAGTGAAGGAGGCACCCAGAGCAGTGAGTGAACGTGATGATAAATTGCTTGCTGAGCACATGGCTAAGCTACGCCAAGATAATGAGGAGGTTAGCGGCGATGAAGACAGTGAGGAGGAAGAAGATACAGGAATGGGTGAGGTTGATGTGGAGAACAATGGTTCTGGGATAATGGAGTGA 816 0.4792 MAPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERSCMFILDGLYIANMVMLLSALTREVKEVGPDGQEVTKVVPAVSEEVKDALEAMRKAEAAGNDDCPVKIKLVAPPLYVLTTQTLDKEQGILVLNNAIVSCTESIEQHKGKLVVKEAPRAVSERDDKLLAEHMAKLRQDNEEVSGDEDSEEEEDTGMGEVDVENNGSGIME 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi62g00003 271 SUPERFAMILY eIF-2-alpha, C-terminal domain 153 246 IPR024055 -
Sebi62g00003 271 MobiDBLite consensus disorder prediction 233 271 - -
Sebi62g00003 271 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 1 102 IPR011488 GO:0003723|GO:0003743
Sebi62g00003 271 CDD S1_IF2_alpha 15 90 IPR044126 GO:0003723
Sebi62g00003 271 FunFam Eukaryotic translation initiation factor 2 subunit alpha 4 91 - -
Sebi62g00003 271 SMART S1_6 16 89 IPR022967 -
Sebi62g00003 271 SUPERFAMILY Nucleic acid-binding proteins 7 89 IPR012340 -
Sebi62g00003 271 Pfam S1 RNA binding domain 15 89 IPR003029 GO:0003676
Sebi62g00003 271 Gene3D - 3 91 IPR012340 -
Sebi62g00003 271 ProSiteProfiles S1 domain profile. 18 89 IPR003029 GO:0003676
Sebi62g00003 271 Gene3D EIF_2_alpha 145 254 IPR024055 -
Sebi62g00003 271 MobiDBLite consensus disorder prediction 243 259 - -
Sebi62g00003 271 Pfam Eukaryotic translation initiation factor 2 alpha subunit 146 187 IPR011488 GO:0003723|GO:0003743
Sebi62g00003 271 Coils Coil 233 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi62g00003 Sebi-Chr62 22107 24646 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi62g00003 2 271 Eukaryotic Initiation Factors Gene Family AT5G05470 60.704 1.89e-114 331