Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi627g00017 ATGCATGGATACCATTATGATGGTAAACTTAAGACTCTCCCAACTCCAAAATCTGAAGGTGACATACTTTCCTCCCCATATTTAAAATCCTTCACATTCAATGATCTGAAGAACGCCACAAGAAACTTTCATCCTGATAGTCTAATAGGACAAGGGGGATTTGGTCATGTCTATAAGGGGTGGATTAATGAGCAATCCCTTGAGGCTGCAAGACCTGGATCTGGAATGATTGTAGCTGTAAAGAAGCTTAAACCTGAAGGTTTTCAAGGCCATAAGGAATGGCTGTCTGAACTCAATTATCTTGGCCAACTTCATCATCCAAATCTTGTAAAGCTCTTTGGATACTGCTTGGATGGGGATAGTAGACTTCTAGTCTACGAGTACATGCCCAAAGGCAACTTGGAGAATAATCTATTTTGCAGGGGCGTACGTTCGCTTCCTTGGGCAACAAGGATCAAAGTTGCTATTGGTGCTGCTCAAGGTCTCACCTTCTTACATGACTCTGAGCAACCAGTTATCTATCGTGATTTCAAGCCTTCCAATATTTTATTAGATTTGGAATTCAATGCAAAACTATCAGACTTTGGTTTGGCCAAAGCAGGGCCCACTGGTGACCTTACTCATGTTTCTACTCAAGTCCTAGGTACTGAAGGCTATGCAGCTCCGGAATATATTGCTACAG 682 0.4208 MHGYHYDGKLKTLPTPKSEGDILSSPYLKSFTFNDLKNATRNFHPDSLIGQGGFGHVYKGWINEQSLEAARPGSGMIVAVKKLKPEGFQGHKEWLSELNYLGQLHHPNLVKLFGYCLDGDSRLLVYEYMPKGNLENNLFCRGVRSLPWATRIKVAIGAAQGLTFLHDSEQPVIYRDFKPSNILLDLEFNAKLSDFGLAKAGPTGDLTHVSTQVLGTEGYAAPEYIAT 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi627g00017 227 Gene3D Phosphorylase Kinase; domain 1 15 128 - -
Sebi627g00017 227 ProSitePatterns Protein kinases ATP-binding region signature. 49 82 IPR017441 GO:0005524
Sebi627g00017 227 PANTHER OS01G0588500 PROTEIN-RELATED 19 227 - -
Sebi627g00017 227 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Sebi627g00017 227 SUPERFAMILY Protein kinase-like (PK-like) 18 226 IPR011009 -
Sebi627g00017 227 Gene3D Transferase(Phosphotransferase) domain 1 129 227 - -
Sebi627g00017 227 ProSiteProfiles Protein kinase domain profile. 43 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi627g00017 227 FunFam Serine/threonine-protein kinase BIK1 11 128 - -
Sebi627g00017 227 Pfam Protein kinase domain 44 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi627g00017 Sebi-Chr627 526761 528044 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi627g00017 29 227 Glycoside Hydrolase AT3G07070 55.941 3.35e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Sebi627g00017 Pkinase 6.8e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi627g00017 - - lja:Lj0g3v0272349.3 411.379