Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi627g00012 ATGGCAAATGGAAACACACCCAATGGACCCGCGACTTTCTGGACTCAAGCAAACGCTCTCCTTAGGAAGAATTTAACCTACCAGAAACGAAATGTGAGGACAAACGTTCGGCTCATCTTGTTCCCGTTCTTTCTCTGTATATTGCTGGTTCTCATTCAAAAGCTGCTCGATAACCAATTGGATAAAGCTAAATACAGGTGTGGTTGCATTTGTACCAAGAAACAAGGTGACCAGTGCCTGGAGAAAACTTGTGGGATTCAGCACTCGGATTTGGACCAAGTTAGCGCCTGTCCCATTACTAACCCTCCCGAATGGCCTCCTTTCTTGCAATTGCCCGCTCCACAATACCGTGCTGTGAGAACAGAGTTTCTTCCCTTTTCTGATGTTCCAAACCCCTCCTGCAGGACCAATGGCTCATGTCCTGTTACTATGCTCTTCACTGGCACTAACCACTCTTTTGGACAAATTTTGTCTGGAAATATGATACCAAGTACCTTTGCTATAAATAACTCTGATTTTATGGGTAGTTTGGCAACAAATGTCTTGGGATCACCATCGAAGACAGAGTACACCAATTTTCTGGAACCTGCATTCTTTTCGAATCTTCCCATTTATTATCTCCAAAGTCAGTGCACACAGAACTCTACCTTCTCCATTCCTGTTAACGTATCGACCACTAGCAGGCAGCAAGAGGTAAGATGTGCTCAGGGTATACCTTTATGGCGTAATAGTTCTTCTGAGGTGAACAATGAGTTATTTAAAGGTTATAGAAAAGGTAACACGGAGAGACAGATCAATGAGATAGCAGTAGGTTATGATTTTCTAAATTCAAATGGGAATATATTTAATGTCAGCATATGGTACAACTCAACCTACAAAAATGACACTGGCTTTGATCCTATTGCACTGGCACGTGTTCCTCGTTCTGTTAATCTGGTATCAAATGCCTTCCTTCAGTTTCTGCTGGGACCTGGTAGCAAAATATTGTTTGAGTTTGTAAAGGAAATGCCAAAACCTGAGACCCCAATCAAGTTTGATTTGGCTTCTCTTCTAGGTGGTCTCTTCTTTACATGGGTCATCTTACAACTTTTCCCTTCATTCATACCAGTAACAATAATAACAGCAACAAAAAGAATAAGACTAGGAGTAACAGGAGGGTGGATCATTGTTATGGAGTTATTTCCTGGGTTTGCATTATATCGTGGGTTATATGAATTTGCTGAATCTGCCTTCAATGGGGATGCTTTGGGGACTCATGGTATGCGGTGGGGAGATCTAAGTGATAGCTCAAATGGCATGAAAGAGGTCTTAGTTATCATATCCGTGGAGTGGATTTTGGTTCTTCTCTTTGCTTATTACATCGATCAAGTTTTGTCATCAGGAAGTGGGAGAAGCCCTCTTTTCTTCTTGAAAGGATTTCAGAAAAAGCCTAGTTCATCTTTTCGGAAGCCTAGCATCAAAAGGCAGGGATCTAAAGTTTTTGTTGACATGGAGAAACCTGATGTTAATCAAGAGAGGGAGAAGGTGGAGCAGCTGCTACTTGAACCAACTATTAATCATGCAATTGTATGTGATAACCTGAGAAAGGTATATCCAGGGAGGGATGGTAACCCAGCAAAATTTGCAGTAAGAGGGTTGTCCCTTGCTTTGCCTCAAGGGGAATGCTTTGGTATGCTTGGTCCCAATGGTGCTGGGAAGACTTCATTTATCAATATGATGATTGGTCTCACCAAGCCAACCTCTGGTTCAGCATTTGTTCAAGGTCTTGACATAAGAACTGACATGGACGGAATATATACTAGCATGGGTGTATGCCCCCAGCATGACTTGCTGTGGGAAAATTTGACAGGAAGAGAGCACCTGCTCTTCTATGGCAGACTAAAAAATCTTAAAGGTTCAGCCTTAACACAAGCGGTGGAAGAATCTTTAAAAAGTGTAAATCTTTTTCATGGAGGAGTTGCTGATAAACAAGCTGGAAAATATAGTGGAGGAATGGAGAGGAGGCTTAGTGTTGCAATTTCATTGATTGGAGATCCTAAATGCATAGGAAATCCAAAGGAGCTGAAAGGCAGATATGGAGGAACTTATGTGTTCACGATGACAGCATCTATGGATCATGAAAAGGATGCAGAGGACTTGGTGCAGCAGCTCTCCCCAAATGCTAACAAGATTTACCATATCTCTGGTACCCAGAAGTTTGAACTGCCAAAAGACGAGGTTAGAATAGCAAATGTATTCCGAGCAGTTGAAACTGCAAAAAGAAATTTCACGGTTTCTGCATGGGGTTTAGCTGACACCACATTGGAAGATGTCTTCATTAAGGTTGCACGCGGTGCTCAGGCATTTGACACCTTGTCATAA 2361 0.421 MANGNTPNGPATFWTQANALLRKNLTYQKRNVRTNVRLILFPFFLCILLVLIQKLLDNQLDKAKYRCGCICTKKQGDQCLEKTCGIQHSDLDQVSACPITNPPEWPPFLQLPAPQYRAVRTEFLPFSDVPNPSCRTNGSCPVTMLFTGTNHSFGQILSGNMIPSTFAINNSDFMGSLATNVLGSPSKTEYTNFLEPAFFSNLPIYYLQSQCTQNSTFSIPVNVSTTSRQQEVRCAQGIPLWRNSSSEVNNELFKGYRKGNTERQINEIAVGYDFLNSNGNIFNVSIWYNSTYKNDTGFDPIALARVPRSVNLVSNAFLQFLLGPGSKILFEFVKEMPKPETPIKFDLASLLGGLFFTWVILQLFPSFIPVTIITATKRIRLGVTGGWIIVMELFPGFALYRGLYEFAESAFNGDALGTHGMRWGDLSDSSNGMKEVLVIISVEWILVLLFAYYIDQVLSSGSGRSPLFFLKGFQKKPSSSFRKPSIKRQGSKVFVDMEKPDVNQEREKVEQLLLEPTINHAIVCDNLRKVYPGRDGNPAKFAVRGLSLALPQGECFGMLGPNGAGKTSFINMMIGLTKPTSGSAFVQGLDIRTDMDGIYTSMGVCPQHDLLWENLTGREHLLFYGRLKNLKGSALTQAVEESLKSVNLFHGGVADKQAGKYSGGMERRLSVAISLIGDPKCIGNPKELKGRYGGTYVFTMTASMDHEKDAEDLVQQLSPNANKIYHISGTQKFELPKDEVRIANVFRAVETAKRNFTVSAWGLADTTLEDVFIKVARGAQAFDTLS 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi627g00012 786 Pfam ABC transporter 544 680 IPR003439 GO:0005524
Sebi627g00012 786 Gene3D - 514 682 IPR027417 -
Sebi627g00012 786 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 522 681 IPR027417 -
Sebi627g00012 786 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 522 762 IPR003439 GO:0005524
Sebi627g00012 786 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 21 380 IPR026082 GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi627g00012 Sebi-Chr627 453368 460803 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi627g00012 531 676 Calmodulin-binding Proteins AT2G36910 25.786 1.32e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi627g00012 - - lja:Lj4g3v1617880.1 636.721