Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sebi626g00032 | ATGGCATCTTCAATCATATTCGCTCTTCTGCTTCTCCTTTTCCATTTTCAACATTCATCTTCGCTTCCCTTATCCGTGGAGAAACTCGATGAAGATATTATAGTCTCATCACCCAAAAACACATTCACAGCAGGATTTTATCCAGTAGGGGAAAATGCTTACACCTTCGCCGTATGGTTCACCCAATCTCATAAAATTCTCCAGAATGCCACTGTTGTTTGGATGGCAAACCGTGACCAGCCGGTTAACGGAAAACGGTCAACACTTTCACTTCTCAAAACAGGTAACCTCGTCCTAACCGATGCAGGTCAGTTCAACGTTTGGTCCACAAACACCGTCTCATTTAACCCACCTGAGTTGTTTTTGTATGACACCGGAAATCTCGTTCTCCGAGAGCAGAACAACCATAGTTCTGTTCTGTGGCAGAGCTTCGATTTCCCAACAGACACGCTCCTTCCTGATCAAACCCTCACAAGGTTCACCAACCTTGTTTCCTCCAAAAGCCAAAGCAACTATTCCTCTGGTTTCTACAAGATGTTCTTTGACATTGACAATGTTTTACGTCTTGTCTATGAAGGCACTCAAGTTTCAAGCGTTTACTGGCCAGATCCGTGGCTTGTGAGCAATAATTTTGGTACTAGTAATGGTAGATCCACTTACAATAGTAGCAGGGTTGCCACACTAGACCGTTTGGGGAAAGTTGTTTCTTCTGATCGTTTCACTATCAAAACAGCTGATTATGGGACGGTGCTTCAACGAAGACTGACTCTTGATCATGATGGGCATAGCAGGATTGATGATCAAGATTGGTCTCAAGGTTGCAAACCAGATTTCCAACCTTCATGTGACAACAAGACAGAGTATAGCTTCCTATCCTTACCCTATGTTGATTTTTATGGATATGACTATGCTTCATCCTTTGTAAATTACACCTATAAACAATGTGAGAATCAGTGCTTGCAATTGTGCCAATGCATGGGATTCCAGTACACATTTGATGTGAAAAGTGGTTATGCTTCGTGTTATCCAAAAACCATGTTGCTAAATGGGCATCGTTCACTGAGTTTCGTAGGAACATTCTACTTGCGGTTGCCAAAAAGCAGTGCTTTATCCAATGAGAACCCTGTGAAAAAGAATGACTTGGTTTGTCTGAGTAATGGAGTAACACAGCTAAAAAGATCATATGTCAAAGGCAAAGAAAATGGATCAGTGAAGTTCATGCTTTGGTTTGCGATTGGCGTGGGAGGAGTTGAGGCCGTGTGCTTCCTTTTGGTGTGGTGTTTCATATTTAAGAATACTAGGAAACACTTGGGTCCTGAAAGTGAAGGCTATGTTCTTGCAACAGCAACAGGATTCAGGAAATTCAGTTACTCTGAATTGAAACAAGCCACAAAAGGCTTCAGTCAAGAGATTGGAAGGGGTGGTGGAGGAATTGTATATAAAGCTATATTATCAGATAAACGAGTTGCAGCAATAAAGCAATTGTATGATGCAAACCAAGGAGAGAGTGAGTTCCTTGCTGAAGTAGGCATCATTGGAAGGCTTAACCACATGAATTTAATTGGCATGTGGGGGTATTGTGCAGAGGGAAAGCACAGGTTGTTGGTGTATGAGTACATGGAAAATGGTTCTTTAGCTCACAATCTCTCATCCAAAGCACTTGATTGGAGTAAGAGGTATAACATCGCTCTGGGAACTGCAAGGGGTCTAGCTTACTTACATGAAGAATGCTTGGAGTGGGTTTTGCATTGTGATATAAAGCCTGAAAATTTACTTCTTGACTCTGATTATCAGCCTAAGGTAGCTGATTTTGGCTTGTCTAAGCTACTAAATCGGAACAACCTGGACAATTCTAACTTCTCAAGGATAAGAGGCACAAGGGGTTACATGGCTCCAGAATGGGTTTTCAACTTGCCAATTACTTCCAAGGTGGATGTTTTTAGCTATGGAATTGTTGTCTTGGAGATGATAACTGGAAGGAGCCCAACAACAGGCATTCAAATCACAGATGGAACAGAGGCACAAAACGAGAGGTTGGTAACATGGGTGAGGGAGAAAAGGAGGAAAGGATCAAAGGGGGCATCTTGGGTGGAACAAATCGTTGACCCTGCTTTGGGATCAAATTATGACGTGAAGAAAATGGAGATATTGGCAACGGTGGCTTTGGAATGTGTATTGGAAGATAAAAATGAGAGACCCAGCATGAGTCAAGTTGTTGAGAGGCTCCAAAGTCATGATCATGATTCTTGA | 2250 | 0.4218 | MASSIIFALLLLLFHFQHSSSLPLSVEKLDEDIIVSSPKNTFTAGFYPVGENAYTFAVWFTQSHKILQNATVVWMANRDQPVNGKRSTLSLLKTGNLVLTDAGQFNVWSTNTVSFNPPELFLYDTGNLVLREQNNHSSVLWQSFDFPTDTLLPDQTLTRFTNLVSSKSQSNYSSGFYKMFFDIDNVLRLVYEGTQVSSVYWPDPWLVSNNFGTSNGRSTYNSSRVATLDRLGKVVSSDRFTIKTADYGTVLQRRLTLDHDGHSRIDDQDWSQGCKPDFQPSCDNKTEYSFLSLPYVDFYGYDYASSFVNYTYKQCENQCLQLCQCMGFQYTFDVKSGYASCYPKTMLLNGHRSLSFVGTFYLRLPKSSALSNENPVKKNDLVCLSNGVTQLKRSYVKGKENGSVKFMLWFAIGVGGVEAVCFLLVWCFIFKNTRKHLGPESEGYVLATATGFRKFSYSELKQATKGFSQEIGRGGGGIVYKAILSDKRVAAIKQLYDANQGESEFLAEVGIIGRLNHMNLIGMWGYCAEGKHRLLVYEYMENGSLAHNLSSKALDWSKRYNIALGTARGLAYLHEECLEWVLHCDIKPENLLLDSDYQPKVADFGLSKLLNRNNLDNSNFSRIRGTRGYMAPEWVFNLPITSKVDVFSYGIVVLEMITGRSPTTGIQITDGTEAQNERLVTWVREKRRKGSKGASWVEQIVDPALGSNYDVKKMEILATVALECVLEDKNERPSMSQVVERLQSHDHDS | 749 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sebi626g00032 | 749 | CDD | B_lectin | 36 | 147 | IPR001480 | - | |
| Sebi626g00032 | 749 | PIRSF | SRK | 1 | 267 | IPR024171 | GO:0004674 | |
| Sebi626g00032 | 749 | PIRSF | SRK | 259 | 749 | IPR024171 | GO:0004674 | |
| Sebi626g00032 | 749 | Gene3D | - | 24 | 146 | IPR036426 | - | |
| Sebi626g00032 | 749 | ProSiteProfiles | Bulb-type lectin domain profile. | 20 | 143 | IPR001480 | - | |
| Sebi626g00032 | 749 | SUPERFAMILY | alpha-D-mannose-specific plant lectins | 71 | 202 | IPR036426 | - | |
| Sebi626g00032 | 749 | CDD | STKc_IRAK | 471 | 743 | - | - | |
| Sebi626g00032 | 749 | FunFam | S-receptor-like serine/threonine-protein kinase | 433 | 539 | - | - | |
| Sebi626g00032 | 749 | Gene3D | Phosphorylase Kinase; domain 1 | 431 | 539 | - | - | |
| Sebi626g00032 | 749 | PANTHER | OS07G0415500 PROTEIN | 261 | 744 | - | - | |
| Sebi626g00032 | 749 | CDD | PAN_AP_plant | 278 | 365 | - | - | |
| Sebi626g00032 | 749 | Pfam | D-mannose binding lectin | 71 | 159 | IPR001480 | - | |
| Sebi626g00032 | 749 | SMART | blect_4 | 26 | 147 | IPR001480 | - | |
| Sebi626g00032 | 749 | ProSitePatterns | Protein kinases ATP-binding region signature. | 471 | 493 | IPR017441 | GO:0005524 | |
| Sebi626g00032 | 749 | SUPERFAMILY | Protein kinase-like (PK-like) | 446 | 743 | IPR011009 | - | |
| Sebi626g00032 | 749 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 581 | 593 | IPR008271 | GO:0004672|GO:0006468 | |
| Sebi626g00032 | 749 | SMART | serkin_6 | 465 | 744 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Sebi626g00032 | 749 | Pfam | Protein kinase domain | 468 | 740 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Sebi626g00032 | 749 | FunFam | Serine/threonine-protein kinase | 540 | 749 | - | - | |
| Sebi626g00032 | 749 | ProSiteProfiles | PAN/Apple domain profile. | 282 | 365 | IPR003609 | - | |
| Sebi626g00032 | 749 | ProSiteProfiles | Protein kinase domain profile. | 465 | 749 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Sebi626g00032 | 749 | Gene3D | Transferase(Phosphotransferase) domain 1 | 540 | 749 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sebi626g00032 | Sebi-Chr626 | 526203 | 528608 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sebi626g00032 | 455 | 744 | Trihelix Transcription Factor Family | AT5G38560 | 42.568 | 4.70e-69 | 238 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | RLK-Pelle_SD-2b | Sebi626g00032 | Pkinase | 3.3e-52 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sebi626g00032 | - | - | gmx:100806357 | 1057.36 |