Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi626g00028 ATGCAAATGGCCTCTTCAATCTTACTATTTGCTCTTCTTCTTTTCCTTTCCCTATGTCAACATTCATCATCATTCTCCCTCTCCGTCGAGAAACCCAACCAAGACATTATAGTCTCATCACCCAAACACATATTCACTGCAGGCTTTTATCCCGTTGGAGAAAATGCTTACTGCTTCGCCATATATTTCACCCAATCCCATACAAACCTCCACAATGCCGCCATTGTTTGGATGGCAAACCGTGACCAACCAGTGAATGGAAAACACTCAAAACTTTTCATTCTCAAGACAGGACGTGAGGAGTGGTTAATGTCAGGGCAAATCAATCAAGAACCTTGTAAGATCCATGGGATTTGTGGACCCAATAGTCTTTGCAGTAACCACCCAAAATTTGGTAGGAAATGTTCGTGTATTCCAGGCTATAGCAGAGTTGATAAACAGGACTGGTCTCAAGGTTGCAAATCAAATTTCCAACTTCCATGCAACAAGACAGAGTCCCGCTTTCAATTGTTACCTCGCGTTGATTTTTATGGATACGACCCTGGCTACTATGAAAATTACACCTTTGAACAATGTCTAAATTTGTGCTTGCAATTGTGCAAATGCAAAGGCTTCCAGTATCGTTTTTTTGTCAACAAGGGTGTCTATAGTTGTTACCCAAAGATGCAGTTGCTAAATGGGCATCGATCACCGGGTTTTCCAGGGAAAATCTATTTGCGATTGCCGAGAAATAGTGATTTTTCCAAAGAGAGCCCTGTTGAAGATGATAATGATGACTTGGTTTGTTCGAGAAATAGAACAAAACAAGTAGAAAGATCATATGTCAAAGCAAAAGAAAATGGATCGGTGAAGTTCATGCTTTGGAAACACTTTGGTGCAAACACACAAGGCAAGGTTCTTGAAGCAGCAACTGGATTCCAGAAATTCAGTTACTCTGAACTGAAACAAGCAACAAAAGGTTTCAGTCAAGAGATTGGAAGGGGTGCTGGAGGAATTGTATATAAAGCTATCTTATCAGATAAACGAGTTGCTGCAATAAAGCGATTGTATGATGCAAACCAAGGAGAAAAAGGTAAGCATAGGTTGCTGGTGTATGAGTACATGGAAAATGGTTCTTTAGCTCACAATCTCTCATCAAATGCACTTGATTGGAGTAAGAGGTATAACATTGCTCCGGGAACAGCAAGGGGTTTGGCCTATTTACATGAAGAATGCTTGGAGTGGATTTTGCACTGTGATATAAAACCACAAAACATACTTCTTGACTCTGGTTACCAACCCAAGGAGCCCAATGATGGGTACCAAATCACAGATGGAACAGAGTCACATAATGAGAGGTTGGTCTCATGGGTGAGGGAGAAAAGGAGGAACACATCAGAAGTGTCATCTTGGATGGAAGAAATCGCTGACCCTGCATTAGGATCAGATTATGACATAAATAAATTGGAGACTTTAGCAATGGTGGCTTTGGATTGTGTAGAGGAAGAGAAAGACCTCAGACCCAGCATGAGTCAGGTTGCTGAGAGGCTACACAGTCATGAACATGATTCTTGA 1554 0.4125 MQMASSILLFALLLFLSLCQHSSSFSLSVEKPNQDIIVSSPKHIFTAGFYPVGENAYCFAIYFTQSHTNLHNAAIVWMANRDQPVNGKHSKLFILKTGREEWLMSGQINQEPCKIHGICGPNSLCSNHPKFGRKCSCIPGYSRVDKQDWSQGCKSNFQLPCNKTESRFQLLPRVDFYGYDPGYYENYTFEQCLNLCLQLCKCKGFQYRFFVNKGVYSCYPKMQLLNGHRSPGFPGKIYLRLPRNSDFSKESPVEDDNDDLVCSRNRTKQVERSYVKAKENGSVKFMLWKHFGANTQGKVLEAATGFQKFSYSELKQATKGFSQEIGRGAGGIVYKAILSDKRVAAIKRLYDANQGEKGKHRLLVYEYMENGSLAHNLSSNALDWSKRYNIAPGTARGLAYLHEECLEWILHCDIKPQNILLDSGYQPKEPNDGYQITDGTESHNERLVSWVREKRRNTSEVSSWMEEIADPALGSDYDINKLETLAMVALDCVEEEKDLRPSMSQVAERLHSHEHDS 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi626g00028 517 ProSitePatterns Protein kinases ATP-binding region signature. 325 347 IPR017441 GO:0005524
Sebi626g00028 517 ProSiteProfiles Protein kinase domain profile. 285 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi626g00028 517 Gene3D Transferase(Phosphotransferase) domain 1 368 435 - -
Sebi626g00028 517 Gene3D Transferase(Phosphotransferase) domain 1 436 517 - -
Sebi626g00028 517 Pfam Protein kinase domain 356 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi626g00028 517 CDD PAN_AP_plant 157 242 - -
Sebi626g00028 517 Pfam S-locus glycoprotein domain 91 143 IPR000858 GO:0048544
Sebi626g00028 517 SUPERFAMILY Protein kinase-like (PK-like) 303 428 IPR011009 -
Sebi626g00028 517 PANTHER OS07G0415500 PROTEIN 6 97 - -
Sebi626g00028 517 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672|GO:0006468
Sebi626g00028 517 Gene3D Phosphorylase Kinase; domain 1 283 361 - -
Sebi626g00028 517 SMART serkin_6 319 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi626g00028 Sebi-Chr626 475479 477366 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi626g00028 300 433 Receptor kinase-like Gene Family AT1G66930 43.796 1.42e-27 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Sebi626g00028 Pkinase 1.8e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi626g00028 - - gmx:100806357 483.026