Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi625g00001 ATGGAACCAAATGCTTGTAGTTGTGTCAAGGGAATTGAGTTGGGAGGCAATTTAGCAACTAGGGCCACGCACAGCAAGGCAGCAAGCCCTCCAAGAGCAATGGGATCTGGATTCTGGCATCCTGGGATGGATGGGAAGAAGAGTAATTATAGAGTGCAGTACTACAGGGAGTGCAATGTCCTTGGAGAGCAGAAGGTGGCGTCCTTCACTTGGGGCACTCTAGAGCAATTAAAGCGAAAGAATGACACTGCTGATTTTGAAGCTGATTCTGGTGATAGGATGACTCTTGCATCCACTGAAGCAGCTAATAGTCTTTTTCAGACACCTATATCAGGAAAGACAAGGAAATCAAGCAAAGCCTCTAGACTTACAAAATGCAACAGATTTGGACCAAAAACCCCAGGCTCAAACATAGGTGAAAGTATTTTGGTTGCCAAATGGCAACTAGGTTCTTCTTCAGGCAATAATCTCACTCCTGCTGGTCAATGTCGTTATGACAGCTCTTTAGGTCTGTTGACAAAGAAGTTCATCAATTTGATCAAACAAGCGGAGGATGGTATTCTTGATTTGAATAAAGCTGCTGACACATTAGAGGTACAAAAGAGGAGAATATATGATATAACGAATGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAGCTTAAAAACAGAATTCAATGGAAGGGCCTGGATGTTTCAAGACCAGGGGAGGCTGATGCTGAAGTTGAAAATCTTACAATAGAGGAGCACCGTTTAGATGAACAAACAAGGGAGGTTCAAGAAAGACTAAGGGATCTTAGTGAAGATCAAAATAATCAAAAATATCTTTTTGTTACTGAGGAAGATATAAAGAGCTTGCCCTGCTTCAAGGATGAAACCCTGATAGCAATTAAAGCTCCACATTGCACCACTTTGGAGGTCCCTGATCCTGATGAGGCTGTTGATTATCCCCAGAGGAGATACAGGATGGTCCTGAGAAGCACAATGGGCCCAATAGATGTATACCTTATTAGTCAATTTGAAGAAAAGTTTGAGGAGATTAATGGTGTTGATGAGGCGCCCAATGTTTCATCCAGTCCAGAGTCTAACAAAAATCAATCAATAGTGGGCTCAGAGGATAGAGGGAAGGACCTAGAAATACAGGAACAAGATGTTCATGGGCCTAGTTTAGATTTTCCTACTTCACAGGACTCTGTGAGTGGGATCATGAAGATTGTTCCTTCAGATTTTGATAGTGATGCTGATTACTGGCTTTTATCTGATGCTGATGTTAGCATAACGGATATGTGGAGAACAGAACCCAGTGTTGAATGGAATAATCTGTATACAGTTCAAGAAGACCATTGTATGACTCACGTGAGCCCACCA 1368 0.4203 MEPNACSCVKGIELGGNLATRATHSKAASPPRAMGSGFWHPGMDGKKSNYRVQYYRECNVLGEQKVASFTWGTLEQLKRKNDTADFEADSGDRMTLASTEAANSLFQTPISGKTRKSSKASRLTKCNRFGPKTPGSNIGESILVAKWQLGSSSGNNLTPAGQCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADAEVENLTIEEHRLDEQTREVQERLRDLSEDQNNQKYLFVTEEDIKSLPCFKDETLIAIKAPHCTTLEVPDPDEAVDYPQRRYRMVLRSTMGPIDVYLISQFEEKFEEINGVDEAPNVSSSPESNKNQSIVGSEDRGKDLEIQEQDVHGPSLDFPTSQDSVSGIMKIVPSDFDSDADYWLLSDADVSITDMWRTEPSVEWNNLYTVQEDHCMTHVSPP 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi625g00001 456 MobiDBLite consensus disorder prediction 352 369 - -
Sebi625g00001 456 Coils Coil 242 272 - -
Sebi625g00001 456 Gene3D - 234 339 - -
Sebi625g00001 456 MobiDBLite consensus disorder prediction 351 372 - -
Sebi625g00001 456 Gene3D - 158 231 IPR036388 -
Sebi625g00001 456 PANTHER TRANSCRIPTION FACTOR E2F 101 436 IPR015633 GO:0000978|GO:0006357
Sebi625g00001 456 Pfam E2F transcription factor CC-MB domain 240 338 IPR032198 GO:0046983
Sebi625g00001 456 SMART E2F_TDP_2 164 229 IPR003316 GO:0005667|GO:0006355
Sebi625g00001 456 FunFam E2F transcription factor 1 158 231 - -
Sebi625g00001 456 Coils Coil 180 200 - -
Sebi625g00001 456 CDD E2F_DD 240 339 IPR032198 GO:0046983
Sebi625g00001 456 SUPERFAMILY "Winged helix" DNA-binding domain 164 227 IPR036390 -
Sebi625g00001 456 MobiDBLite consensus disorder prediction 111 130 - -
Sebi625g00001 456 Pfam E2F/DP family winged-helix DNA-binding domain 166 229 IPR003316 GO:0005667|GO:0006355
Sebi625g00001 456 SUPERFAMILY E2F-DP heterodimerization region 238 339 IPR037241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi625g00001 Sebi-Chr625 5063 8674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi625g00001 77 449 E2F-DP Transcription Factor Family AT5G22220 55.779 4.91e-134 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Sebi625g00001 E2F_CC-MB 1.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi625g00001 K06620 - gmx:100819817 586.645