Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi624g00012 ATGGACTTGAAGTCGAATCACACTCCTGTTCTCACTGATACTGCACCCATAACAAAGTCAAGACTGCATGTGCATTCCAGTTTGTTGCCTTATTCCCATGCCGGGGCAACCTTTCCACATGGTATGTTATTGACTATCCCAAGGAAGAAGACAGGAATTCTTGAAGATGTTCGTTCTAGTGGTTGGTTGGATGCCATGAAATCATCTTCACCTCCACCCAGGAATATAACAAAGGATGTTAGTAATGGGTTTGCATCATCTGAAGCTGATACTGCTAGTTCTTATTTTACCTGGCTGCTAAAATATCCATCAGCGCTTACATCTTTTGATCAAATTACAAACTATGCAAGAGGAAAAAGAATTGCATTGTTTATGGATTATGATGGAACTCTTTCACCAATTGTGGATAATCCTGACTGTGCCTTCATGTCCGAAAATATGCGTGCTGCTGTTAAAAAGGTGGCAGAATATTTTCCAACAGCAATAATTAGTGGAAGAAGTCGTGACAAGGTGTATGAATTTGTAGGACTAACAGAACTCTATTATGCTGGTAGTCATGGGATGGACATCATTGGCCCTGTTAGACAATCTGTATCTGATAACCACCCTAATTGCATCATTAGGTCTACAGATAAGCAGGGTAAGGAAGTTAATTTATTCCAACCTGCTGCTGAATTCCTGCTCATGATTGATGAGGTATTGAAGTCTCTCATTGAGTGTACCAAAGACATCAAAGGAGCAAAAGTTGAGAACAACAAATTTTGTGTCTCTGTACATTACCGCAATGTAGATGAGAAGAACTGGGATTTGGTGGGGCAGCGTGTTAATGATGTTCTAAAGTGCTATCCACGTTTGAGACTAACTCATGGGCGTAAGGTTTTAGAGGTTCGACCTGTGATTAACTGGGATAAGGGAAAAGCTGTGACATTTTTACTTGAGTCACTTGGACTTAACAATTGTGATGATGTGCTTCCTATTTATATTGGAGATGATCGGACAGATGAAGATGCATTTAAGGTTTTGAGAGAGGGAAATAAAGGTTATGGGATCTTAGTGTCTTCAGCACCAAAGGAAAGCAATGCAATTTATTCTCTTCGTGATCCATCAGAGTTCAGCACTGTTCATTTACCTTAA 1134 0.3995 MDLKSNHTPVLTDTAPITKSRLHVHSSLLPYSHAGATFPHGMLLTIPRKKTGILEDVRSSGWLDAMKSSSPPPRNITKDVSNGFASSEADTASSYFTWLLKYPSALTSFDQITNYARGKRIALFMDYDGTLSPIVDNPDCAFMSENMRAAVKKVAEYFPTAIISGRSRDKVYEFVGLTELYYAGSHGMDIIGPVRQSVSDNHPNCIIRSTDKQGKEVNLFQPAAEFLLMIDEVLKSLIECTKDIKGAKVENNKFCVSVHYRNVDEKNWDLVGQRVNDVLKCYPRLRLTHGRKVLEVRPVINWDKGKAVTFLLESLGLNNCDDVLPIYIGDDRTDEDAFKVLREGNKGYGILVSSAPKESNAIYSLRDPSEFSTVHLP 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi624g00012 377 CDD HAD_TPP 122 371 - -
Sebi624g00012 377 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 29 371 IPR044651 GO:0004805|GO:0005992
Sebi624g00012 377 SUPERFAMILY HAD-like 122 371 IPR036412 -
Sebi624g00012 377 NCBIfam trehalose-phosphatase 118 370 IPR003337 GO:0003824|GO:0005992
Sebi624g00012 377 FunFam Trehalose 6-phosphate phosphatase 121 211 - -
Sebi624g00012 377 NCBIfam HAD-IIB family hydrolase 123 342 IPR006379 -
Sebi624g00012 377 FunFam Trehalose 6-phosphate phosphatase 229 375 - -
Sebi624g00012 377 Pfam Trehalose-phosphatase 124 369 IPR003337 GO:0003824|GO:0005992
Sebi624g00012 377 Gene3D - 222 374 IPR023214 -
Sebi624g00012 377 Gene3D - 121 212 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi624g00012 Sebi-Chr624 359133 361757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi624g00012 112 339 Trehalose Biosynthesis Gene Families AT1G23870 24.576 7.53e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi624g00012 K01087 - gmx:100819495 686.411