Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi624g00009 ATGAATACTACTTTTTCTCATGTTCCCCCTGGTTTTAGGTTCCATCCCACAGATGAAGAACTTGTTGACTACTACCTTAGGAAGAAAGTTGCATCAAGGAGGATTGACCTTGATGTCATTAAAGATGTTGACCTTTACAAAATTGAGCCTTGGGATCTTCAAGAGATTTGCAGAATAGGAACAGAAGAGCAAAATGAATGGTACTTCTTTAGCCACAAGGATAAGAAGTATCCAACTGGAACTCGCACAAATAGAGCAACTGCTGCAGGATTTTGGAAAGCAACAGGAAGAGACAAGGCAATCTATTCAAAGCATGACTTGATAGGAATGAGGAAAACCTTAGTCTTTTATAAAGGAAGAGCTCCAAATGGACAAAAATCAGATTGGATTATGCATGAGTATCGCCTTGAGACTGATGAAAATGCCACACCACAGGCAAGTTCATTTTAA 450 0.3911 MNTTFSHVPPGFRFHPTDEELVDYYLRKKVASRRIDLDVIKDVDLYKIEPWDLQEICRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENATPQASSF 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi624g00009 149 ProSiteProfiles NAC domain profile. 8 149 IPR003441 GO:0003677|GO:0006355
Sebi624g00009 149 FunFam Nac domain-containing protein 86 17 148 - -
Sebi624g00009 149 Pfam No apical meristem (NAM) protein 9 136 IPR003441 GO:0003677|GO:0006355
Sebi624g00009 149 SUPERFAMILY NAC domain 5 141 IPR036093 GO:0003677|GO:0006355
Sebi624g00009 149 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 138 - -
Sebi624g00009 149 Gene3D NAC domain 17 148 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi624g00009 Sebi-Chr624 201967 202528 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi624g00009 3 145 NAC Transcription Factor Family AT1G12260 88.112 3.96e-97 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi624g00009 NAM 3.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi624g00009 - - mof:131146427 295.434