Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi624g00008 ATGGCAATGATGGGAAAGATACTCTTGACACTGTTATTGTTGTCATCAATTTTCTCAATAGCCACATCCAAAAGAAGATCTTCCAGCAACAACATAGATTGGTGGTGCAACCAAACCCCACACCCTGAACCATGCAAATACTACATAAAACAAAGCCACCACCACTACCCTCACAAGCTCAAACACAAATCCCAATTCCGTGAAATCCTTATTCACTTGGCATTACAGAGAGCCGTTATCATGCAAAAGCAAGCACGTGATTTCGGCCAAAATTGGGTCACAAAGAAACAGAGATCCGTTTCCCGTGACTGTTTGAAACTCTATAGCAACACCGTTTTCCATCTCAACCGTACATTCCACGACCTCCATCTGAAGAAGAGGTGTTCACCGTTCGATGCACAAACGTGGCTGAGCACTGCTCGAACGAACATTGAGATATGCCGAAACGGTGCGTCGGAACTGAGGATCCCAGATTTCATAGCACCCATAACGAGGAACAATGTGACAGAGATTATAAGCAATAGCTTATTCGTGAATTGGGGATTTGTGAAACATGAAGCGAGTGGTTATTACACGGATGACATGTTTCCGAGATGGTTTTCTCCACATGAGAGGAGGCTTTTGCAGACTTCTTCTTCTTCTTCAGTGAAGGCTCATCTTGTGGTAGCAAAAGATGGTTCAGGGCATTTCAGAACAGTTCAAGGTGCTATCAATGCAGCGGCAAGGAGGAAGTTCAAAACGAGGTTTATTATATATGTGAAGAGAGGGGTTTATAGAGAGAATATTGAGGTTGATAAGACCAACGATAACATCATGTTGGTTGGTGATGGGATCAGATATACGATCATAACAAGTGGAAGGAGCGTTAAGCAAGGATTTACCACCTATAGCTCTGCAACTGCAGGGATTGATGGTCTTCACTTCATTGCACGTGGCATTTCCTTCCAAAACACGGCGGGACCATTGAAGGGTCAAGCAGTGGCACTTCGATCAGCCTCTGATCTCTCTGTCTTCTACCGATGTGCCTTTGTGGGATACCAAGACACTCTCATGGTTCATGCACAGCGTCAATTTTACAGAGAATGTTACATCTATGGCACCGTTGACTTCATCTTTGGCAATGCTGCTGTTGTTTTCCAAAACTGCATGATTCTTGTGAGAAGGCCTTTAAATGGTCAAGCAAACATGATCACAGCACAAGGTAGAGATGACCCTTTTCAAAACACAGGGATTTCAATTCACAATTCTCAGATCAGAGCTGCTCCTGACCTCAAGCCCGTTCTTTCCAAATTCAACACTTTCTTGGGCCGTCCTTGGCAGAGATACTCAAGAGTTGTGGTCATGAAAACGTTCATGGATAGTTTGGTGAGCCCAATGGGCTGGTCTCCATGGGGGAATACTAATTTTGCTCAGAGTACTCTTTTTTATGGAGAGTATAAGAACTTTGGGCCTGGTTCATCTACAGCAAACAGGGTTCGATGGCCTGGTTTTCATGTTATAACAAGCCCAACTGAGGCATCGAGCTTCACTGTTGCTAATCTCCTTGCTGGACGCACGTGGTTGCCTGCCACTGGCGTGCCATTCACTTCTGGCCTTTAA 1599 0.4465 MAMMGKILLTLLLLSSIFSIATSKRRSSSNNIDWWCNQTPHPEPCKYYIKQSHHHYPHKLKHKSQFREILIHLALQRAVIMQKQARDFGQNWVTKKQRSVSRDCLKLYSNTVFHLNRTFHDLHLKKRCSPFDAQTWLSTARTNIEICRNGASELRIPDFIAPITRNNVTEIISNSLFVNWGFVKHEASGYYTDDMFPRWFSPHERRLLQTSSSSSVKAHLVVAKDGSGHFRTVQGAINAAARRKFKTRFIIYVKRGVYRENIEVDKTNDNIMLVGDGIRYTIITSGRSVKQGFTTYSSATAGIDGLHFIARGISFQNTAGPLKGQAVALRSASDLSVFYRCAFVGYQDTLMVHAQRQFYRECYIYGTVDFIFGNAAVVFQNCMILVRRPLNGQANMITAQGRDDPFQNTGISIHNSQIRAAPDLKPVLSKFNTFLGRPWQRYSRVVVMKTFMDSLVSPMGWSPWGNTNFAQSTLFYGEYKNFGPGSSTANRVRWPGFHVITSPTEASSFTVANLLAGRTWLPATGVPFTSGL 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi624g00008 532 Pfam Pectinesterase 220 517 IPR000070 GO:0030599|GO:0042545
Sebi624g00008 532 Pfam Plant invertase/pectin methylesterase inhibitor 31 176 IPR006501 GO:0004857
Sebi624g00008 532 SUPERFAMILY Pectin lyase-like 214 531 IPR011050 -
Sebi624g00008 532 NCBIfam pectinesterase inhibitor domain 7 178 IPR006501 GO:0004857
Sebi624g00008 532 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 178 IPR035513 -
Sebi624g00008 532 PANTHER PECTINESTERASE 17 522 - -
Sebi624g00008 532 Gene3D - 212 532 IPR012334 -
Sebi624g00008 532 SMART PMEI_2 27 178 IPR006501 GO:0004857
Sebi624g00008 532 ProSitePatterns Pectinesterase signature 2. 364 373 IPR033131 -
Sebi624g00008 532 CDD PMEI-like_3 34 179 - -
Sebi624g00008 532 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 180 IPR035513 -
Sebi624g00008 532 FunFam Pectinesterase 213 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi624g00008 Sebi-Chr624 181151 183741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi624g00008 22 532 Carbohydrate Esterase AT5G51500 60.116 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi624g00008 K01051 - gmx:100807908 874.774