Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi623g00015 ATGTCTGATAATTCTTCATTTAGTAGCTTTCTCTCTGCAGCCACTCCAAGTTCGCCACATAATTCCCATGCACCTCCAAAAAGCACCACAATAGCCCAACCTTGTTGTATTTGCACCCATTGCAACCATCTCCTCACCTTCAATCACCATGCTGGTAATGTAGCAGAGCAAGGAACAAGCAAAACTGGGTCCCATATGCAACCCCAACAAAGCTCAAGGTGGAGTCCAACACCAGTTCAGTTATTAGTCCTTGAGGAATTGTATAGGCAGGGCACAAAGACACCATCAGCAGAACAAATCCAGCAAATAGCTGCACAGCTACGCCAGTTTGGGAAGATTGAAGGGAAGAATGTGTTCTATTGGTTTCAAAATCACAAGGCAAGAGAGCGGCAAAAGCGTCGTCGCAGAGAGATGGAGGAAACTGCTTCTTCTACTCAAGGGTTGAAAGAGACAGGTTGTGGAGTTAAAGAGACAAAGAAGTGGGCATCCACTTCAAACTGCAGTGGACATGCAGAGGAATCTGCTGCACTGGATATATCAGAAAAGGGATCTAGTGGGTGGGCTCAATTTGAGGAGAGAGGAATACAAGTTTTGAGGAGAAGCATATCACAAGCAGAAAGGCAAGCTAAGTGCCAAAATATAGAAATGCCTTGCTTCCAAGCTCCAATTACTATGCCAATGCCACAAAGACAACAACTTTTAACCCCTCAAAATTATGATTTACAATCTGTATTCAACAGAGGAATTAGTTTCAACTATTATGATGAAGAAAATGCAGATGCAAAGACCCTTGACCTTTTTCCAGTTAAGAGGGATGACCAACAAGATGGAATTTGTGTAGCTCCTGAGAGGAAATCTATGTTATGTGGCAATGCTTCTATGGACACTGAAATCACCTCCAATCAGTTTTTTGAGTTTCTTCCTTTAAGAAACTAA 936 0.4252 MSDNSSFSSFLSAATPSSPHNSHAPPKSTTIAQPCCICTHCNHLLTFNHHAGNVAEQGTSKTGSHMQPQQSSRWSPTPVQLLVLEELYRQGTKTPSAEQIQQIAAQLRQFGKIEGKNVFYWFQNHKARERQKRRRREMEETASSTQGLKETGCGVKETKKWASTSNCSGHAEESAALDISEKGSSGWAQFEERGIQVLRRSISQAERQAKCQNIEMPCFQAPITMPMPQRQQLLTPQNYDLQSVFNRGISFNYYDEENADAKTLDLFPVKRDDQQDGICVAPERKSMLCGNASMDTEITSNQFFEFLPLRN 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi623g00015 311 CDD homeodomain 73 127 IPR001356 GO:0003677
Sebi623g00015 311 Gene3D - 63 132 - -
Sebi623g00015 311 MobiDBLite consensus disorder prediction 1 26 - -
Sebi623g00015 311 SUPERFAMILY Homeodomain-like 64 134 IPR009057 -
Sebi623g00015 311 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 52 305 IPR044555 GO:0003700|GO:0099402
Sebi623g00015 311 MobiDBLite consensus disorder prediction 55 76 - -
Sebi623g00015 311 Pfam Homeodomain 71 131 IPR001356 GO:0003677
Sebi623g00015 311 Coils Coil 188 215 - -
Sebi623g00015 311 ProSiteProfiles 'Homeobox' domain profile. 67 132 IPR001356 GO:0003677
Sebi623g00015 311 SMART HOX_1 69 136 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi623g00015 Sebi-Chr623 265294 267183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi623g00015 71 186 Wox Gene Family AT3G18010 52.555 9.39e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Sebi623g00015 Homeodomain 2.3e-19 CL0123