Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi623g00012 ATGACACTCGACTTCCACACCAACAAGAAGGTTCTAGAAGAGGTCGCTATTATACCTTCCAAAAGGCTCCGAAACAAGATCGCTGGCTTCTCCACACATCTCATGAAGCGAATTCACAAAGGTCCCGTTCGTGGCATCTCCCTCAAGTTTCAGGAAGAAGAGCGTGAACGCCGCATGGACTTCGTTCCCGAAGTTTCCGCCATTAACACCGAAAATATTCAGGTCGATAAGGAAACACTCGACATGCTCCATGCCCTTGGACTCAATGATATTCCTGGCATCACACAGGTTGACCCTGTCCCTCTCCTAGTTTTTCCTTCTAGGAGAAACATGAAGCTGGTCTTAACACCTCCTGTAAACTAA 363 0.4738 MTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKRIHKGPVRGISLKFQEEERERRMDFVPEVSAINTENIQVDKETLDMLHALGLNDIPGITQVDPVPLLVFPSRRNMKLVLTPPVN 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi623g00012 120 PANTHER 40S RIBOSOMAL PROTEIN S17 1 98 IPR001210 GO:0003735|GO:0005840|GO:0006412
Sebi623g00012 120 ProSitePatterns Ribosomal protein S17e signature. 18 33 IPR018273 GO:0003735|GO:0005840|GO:0006412
Sebi623g00012 120 Pfam Ribosomal S17 1 97 IPR001210 GO:0003735|GO:0005840|GO:0006412
Sebi623g00012 120 Gene3D - 1 39 IPR036401 GO:0003735|GO:0005840|GO:0006412
Sebi623g00012 120 SUPERFAMILY Rps17e-like 2 38 IPR036401 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi623g00012 Sebi-Chr623 222870 223957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi623g00012 1 109 Cytoplasmic Ribosomal Protein Gene Family AT5G04800 74.336 1.01e-57 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi623g00012 K02962 - gmx:100527036 189.889