Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi623g00009 ATGGAGAACATTCTTGGTCTTATCAGACTTCGTATCAAAAGAGGCACTAATCTCATAGCTCGTGATACTCGTACAAGTGACCCATATGTTGTTGTCACCATGGCCGAACAGAAACTGAAAACTGGTGTTGTGAAAGATAACTGTAATCCTGAGTGGAATGAAGAATTGACACTTTATCTTGGAGATGTTAATGCTCCAATACATCTGACAGTTTCTGACAAAGACACTTTCACTGTGGATGACAAAATGGGCGAAGCAGAGATAGACATAAAACCATATCTCCAGTGTGTGAAGATGGGCTTGAACGATCTCCCAGATGGCCATGTAATCAAGAAGGTTGAACCAAATAGGACTAATTGCCTTGCTGAAGAGAGTAGCTGCATATGGAGAAATGGAAAAGTCATCCAAGAGATGAATTTAAGATTGAGAAATGTTAAGTCTGGGGAAGTAACGGTGGAAATTGAGTGGATTGATCTTCCAGATTCCAAGGGCTTATCAGAGGTTGATTTTTAG 513 0.4035 MENILGLIRLRIKRGTNLIARDTRTSDPYVVVTMAEQKLKTGVVKDNCNPEWNEELTLYLGDVNAPIHLTVSDKDTFTVDDKMGEAEIDIKPYLQCVKMGLNDLPDGHVIKKVEPNRTNCLAEESSCIWRNGKVIQEMNLRLRNVKSGEVTVEIEWIDLPDSKGLSEVDF 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi623g00009 170 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Sebi623g00009 170 Pfam C2 domain 7 92 IPR000008 -
Sebi623g00009 170 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 158 IPR035892 -
Sebi623g00009 170 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 3 163 IPR044562 -
Sebi623g00009 170 Gene3D C2 domain 4 165 IPR035892 -
Sebi623g00009 170 SMART C2_3c 7 102 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi623g00009 Sebi-Chr623 173284 174775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi623g00009 38 166 C2H2 Transcription Factor Family AT1G70790 59.542 5.53e-51 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi623g00009 - - gmx:100781585 306.219