Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi622g00017 ATGGCTTCAAGCTATCAAGCTGATCCTCGGTTGTTAGGTGAGATTCATATTGCTCTTCTGAGATCCATTGTAAAAGATATTGAAGATGTTGCAAGAACACCCTCTACTGGCTTAGGAGCTAATCAGAACAGTATTGCCAACTCTGGTGGGGGGCATCCACAGGCGTATATGTGGGGTTTTGATATAAGAAATTGGCAGCGGCATTTAAATCCATTAACATGGCCAGAGATTTTGCGACAATTTGCTTTATCAGCAGGATTTGGGCCTAAACTGAAGAAACAGAATATCGAGCAAGTGCATCCTTGCAATAACAATGAGGGTAATGATGGTAAAGATATAATTTCTAATCTACGCAGTGGAGCAGCTGTTGAAAATGCTCTTGCTATTATGCAAGAGAAGGGATTATCTAACCCAAGAAGATCTAGACATCGCTTGACGCCTGGAACTGTTAAATATGCTGCTTTTCATGTCCTTTCTCTTGAAGGAAACAGAGGCCTCAATATATTGGAAGTTGCAGACAAGATTCAGAAATCTGGGCTTCGTGATCTTACTACAAGCAAAACACCAGAGGCTTCTATAGCTGCTGCTTTGTCTAGGGATACAAAATTATTTGAAAGAACAGCTCCTTCAACTTATTGTGTACGCCCTGCATATAGAAAGGACCCAGCTTATTCTGAAGCCATTTATTCAGCTGCCAGGGAAAGAATCAGGATATTCAAAAGTGGATTTGCGGATGCAGAAGAAGCTGATGATGGTAAAAGGGATGAAGATTCTGAAAGTGATGTGGCAGAAGATGCTGAGATTGATGATTTAGGAACTGGATCAAATACGAAGGAGGGATCCAATTCTGAGGAATTTAATGCTAACAATGTAATGAGATGTAGAAGGGACAGTGGTGTGGCTTTGAAAATTCCTGGTGCTTGCTGTGAGAAAGTGGATAAGGGTTTAGCTTCAGTTGTTGCTGAAGGCTTCAACAAACATAAAGATGTTAGTACCTCTAGTGAAATTCCTGTCTGCAGCAATGATGTGACTAATCCTATTCTAGAAGGCATGGATGTTGATGAAAGCATTCCAGGTGAACCATGGGTACAAGGGCTTATGGAAGGAGAGTACTCAGATCTTAGTGTAGAGGAGCGCCTTCACGCTCTTGTTGCTTTGATTGGTGTGGCAATTGAAGGAAATTCTATCCGCATTGTACTTGAGGAACGTCTAGAAGCAGCAAATACTTTAAAGAAGCAGATGTGGGCAGAAGCACAGCTTGATAAACGACGTATCAAAGAGGATTATTTTGCTAAGATTCAGTCTGTCTCTTATTTGATCAGTAAGAATGAACCAGCTGTTTTATCTCCATCAGTAGAGGGTAAACAGTGTCCATTGCTTACTGTTGATGACAAAAATGATAAGGCTTTACTTTCTTCAATTGACCAGCATGAACAGGCAAACACACTACAAGAGAATCAGAATCATCTTCAGAGTTCCCAATTAGAAGTCAACACACAGACACAAGATTGCTCTACTGGCCTAGATAATTACTCTTTCCAACAATCAGGATATCCTGCTGAAAAATCAAGATCAAATTTAAAATCATACATTGGCTATTTGGCAGAACAAATTTACATGTACAGGTCATTGCCTCTTGGTTTGGATCGAAGACGTAATCGATACTGGCAGTTCATTACATCTGCTTCTCAAAATGATCCAGGTTGTGGTAGGATTTTTGTGGAGTTGCACGACGGTTGTTGGAAGTTGATTGATTCTGAAAAGAGTTTTGATGCTCTATTGGCATCTTTGGATGTACGTGGGATCAGGGAGTCTCACTTGCATATGATGTTGCAAAGAATTGAGATGTCCTTCAAGGAATCTGTTAGAAGAAATGTCCTAAATGGTAACTTGAGAATGCAAAACAGAGACACTGTAAAGAAACTCAAGACAGAAGCTATTGAAATGGCAACAGACCTAGATTGCAGTGCTAATATTCACTGTCCTGCTTCTGTATGCATTGATAATTTCGATGAATCAGAGACCTCCACATCTTTTGTGGTTCAGCTTGGAAGAAATGAAGCTGATAACAAAGATACTTTTCTGAGATATAGGGACTTTGAGAAATGGATGCGAAAGGAATGCCTAAATTCCTCAGTATTATGTGGGATGAAGTTTGGGAATAAAAGATGCAAAGAGCTGCTGGCCATATGCAGAGTGAAGATTGACACTGATTATATTCTTGTTTCATCATCATCATCTCCTTTGAGGATGAGATTGCTCAAAATCCTCTTGTCAGTTGTTGAGGCAACCCTTCCACAAGAAGCTCTGCAACCTCTTTGGACAGAGAGGTACAGGAAATCTTGGAGTACAAAGCTGGAAGCTTCCACATCATTTGAAGACCTTCTTCAGATGGTGAAAGTATGCCGGGTACTTCCATGGGTGCCATATACCACGGCTGCTGTGGCTCTAAGGCTCTTGGAACTTGATGCATGCATCTTTTACACCTCAAAGCAGAAGTTGGAGTCTGAGAAGGATAAGAAAATAGGAATTGTTATGAAGCTTCCATCAAAATATGCTGCTGCTAAAATTTCCTGCAATGCTGGTGCAACAGAAACTTCACTTCAGGCCAAGCATACTGTAGAGAAACATGTTGATCTTGGAGCTGGCCTTACAAGCTACAGCAGAGGGCAAAGGACTCACCAAGCCCGTGCTCATTCTCCTGGTGGAAGATCACAAGTGAAGGTTGTTAGTTCAAGATCCAATTCTAGAAAGAGAAGCACTGCCTCTAACAGCAGGAAAATGGAAAAATTACTTGGATGGAAAGGAAAACCATGCGGACGAGGACATGTTCGTGGTCGTCGGAGCATTAGAAACAGGCAGAAACCAGCAGCCAAGGTGGATGTGATAAGTAGTGAGAGGGATGCCCCAAAAGATATTATTACAGAGGAAGCACCAGGTATTTTTGTCAGAGAGGATATTAATGAAGGTGAAATGGAAGCCACTGCTCTAAATGCTTGTAGTTCAGATAGATCAGGCTATGAAGATGATATTTATCAACCAACAGGTGATGAGTATGATTATTTGGTGGATAATAATGATGGATATCAGGATAGGGTGAACAAGAGAGTAGAAAATGCAGAACAAAGCATGGATCCGGATGGAGTGGATTCTGCTTCATCAGATTACAGTGATTAA 3177 0.4101 MASSYQADPRLLGEIHIALLRSIVKDIEDVARTPSTGLGANQNSIANSGGGHPQAYMWGFDIRNWQRHLNPLTWPEILRQFALSAGFGPKLKKQNIEQVHPCNNNEGNDGKDIISNLRSGAAVENALAIMQEKGLSNPRRSRHRLTPGTVKYAAFHVLSLEGNRGLNILEVADKIQKSGLRDLTTSKTPEASIAAALSRDTKLFERTAPSTYCVRPAYRKDPAYSEAIYSAARERIRIFKSGFADAEEADDGKRDEDSESDVAEDAEIDDLGTGSNTKEGSNSEEFNANNVMRCRRDSGVALKIPGACCEKVDKGLASVVAEGFNKHKDVSTSSEIPVCSNDVTNPILEGMDVDESIPGEPWVQGLMEGEYSDLSVEERLHALVALIGVAIEGNSIRIVLEERLEAANTLKKQMWAEAQLDKRRIKEDYFAKIQSVSYLISKNEPAVLSPSVEGKQCPLLTVDDKNDKALLSSIDQHEQANTLQENQNHLQSSQLEVNTQTQDCSTGLDNYSFQQSGYPAEKSRSNLKSYIGYLAEQIYMYRSLPLGLDRRRNRYWQFITSASQNDPGCGRIFVELHDGCWKLIDSEKSFDALLASLDVRGIRESHLHMMLQRIEMSFKESVRRNVLNGNLRMQNRDTVKKLKTEAIEMATDLDCSANIHCPASVCIDNFDESETSTSFVVQLGRNEADNKDTFLRYRDFEKWMRKECLNSSVLCGMKFGNKRCKELLAICRVKIDTDYILVSSSSSPLRMRLLKILLSVVEATLPQEALQPLWTERYRKSWSTKLEASTSFEDLLQMVKVCRVLPWVPYTTAAVALRLLELDACIFYTSKQKLESEKDKKIGIVMKLPSKYAAAKISCNAGATETSLQAKHTVEKHVDLGAGLTSYSRGQRTHQARAHSPGGRSQVKVVSSRSNSRKRSTASNSRKMEKLLGWKGKPCGRGHVRGRRSIRNRQKPAAKVDVISSERDAPKDIITEEAPGIFVREDINEGEMEATALNACSSDRSGYEDDIYQPTGDEYDYLVDNNDGYQDRVNKRVENAEQSMDPDGVDSASSDYSD 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi622g00017 1058 Pfam HB1, ASXL, restriction endonuclease HTH domain 148 215 IPR007759 GO:0006355
Sebi622g00017 1058 MobiDBLite consensus disorder prediction 886 921 - -
Sebi622g00017 1058 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 740 799 IPR044977 GO:0006357
Sebi622g00017 1058 MobiDBLite consensus disorder prediction 1003 1058 - -
Sebi622g00017 1058 MobiDBLite consensus disorder prediction 886 928 - -
Sebi622g00017 1058 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 542 614 IPR028941 -
Sebi622g00017 1058 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 359 401 IPR028942 -
Sebi622g00017 1058 MobiDBLite consensus disorder prediction 250 268 - -
Sebi622g00017 1058 MobiDBLite consensus disorder prediction 247 284 - -
Sebi622g00017 1058 MobiDBLite consensus disorder prediction 1029 1043 - -
Sebi622g00017 1058 ProSiteProfiles HARE-type HTH domain profile. 148 217 IPR007759 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi622g00017 Sebi-Chr622 499641 508750 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi622g00017 8 856 Homeobox Transcription Factor Family AT5G44180 46.653 0.0 764
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi622g00017 - - gmx:100797480 1472.99