Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi622g00016 ATGGGTGTGGACTATTACAAGATCTTGCAGGTTGATAAGAATGCCAAAGAAGACGACTTGAAGAAGGCTTATAGGAAACTTGCCATGAAATGGCACCCTGATAAGAACCCAAGCAACAAGAAAGAAGCAGAAGCTAAGTTTAAGCAAATTTCCGAGGCCTATGAGGTGCTTAGTGATCCTCAGAAAAGAGCTATCTATGATCAATATGGGGAAGAGGGTCTGAAGGGTCAGGTTCCCCCTCCTGATGCTGGTGGTGCTGGAACCGGAACTACCTTCTTTTCCACAGGAGATATCCCCGGATCGTTTCGGTTCAATCCCAGGAGTGCTGATGACATTTTTGCAGAGTTCTTTGGGTTCTCAAGCCCATTTGGTGGCATGGGTGGGAGAGGTGGTGGTGGCATGAGATCGAGGTTCTCTGGTGGGATGTTTGGTGATGATATGTTTGGATCTTTTGGAGAAGGAGGAGGAGGGGTACATATGAATCAAGGTGCTCCTCGCAAAGCTCCTCCTGTTGAGAACAGGTTGCCCTGCACTCTGGAGGAGATATATAAAGGGGCTACAAAGAAGATGAAGATTTCTAGAGAAATTACAGATGCCACTGGGTGCATTCAGAATGTTTACCATTTTCCTAACAAAAAAGAAATGGGAATGGAACTGCCTGGTTGGAAGAAGGGGACAAAGATCACCTTCCCAGAGAAGGGTCATGAACAGCCAAATGTAATACCTGCAGACCTTGTTTTCATTGTTGATGAAAAACCACATGGTGTCTTTATTCGCGATGGAAATGATCTGATTGTTACTAAGAAGATTTCTCTTGCGGAAGCCTTAACCGGGTATACAGTGCACCTCACAACCCTTGATGGTAGAAATTTAAGCATACCTATTAACAATGTTATCCATCCCAATTATGAGGAGGTTGTCCCAAAAGAAGGAATGCCATTCCCCAAGGATCCGTCAAAGAAGGGAAACTTGAGGATAAAGTTCAGCATCAAGTTACCTGCTCGACTCACTGATGAACAAAAAGCAGGAATTAGGAAACTCTTGGCTGCCTCAGTCTGA 1059 0.4476 MGVDYYKILQVDKNAKEDDLKKAYRKLAMKWHPDKNPSNKKEAEAKFKQISEAYEVLSDPQKRAIYDQYGEEGLKGQVPPPDAGGAGTGTTFFSTGDIPGSFRFNPRSADDIFAEFFGFSSPFGGMGGRGGGGMRSRFSGGMFGDDMFGSFGEGGGGVHMNQGAPRKAPPVENRLPCTLEEIYKGATKKMKISREITDATGCIQNVYHFPNKKEMGMELPGWKKGTKITFPEKGHEQPNVIPADLVFIVDEKPHGVFIRDGNDLIVTKKISLAEALTGYTVHLTTLDGRNLSIPINNVIHPNYEEVVPKEGMPFPKDPSKKGNLRIKFSIKLPARLTDEQKAGIRKLLAASV 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi622g00016 352 Gene3D - 170 252 - -
Sebi622g00016 352 Pfam DnaJ C terminal domain 172 333 IPR002939 -
Sebi622g00016 352 CDD DnaJ_C 169 336 - -
Sebi622g00016 352 SUPERFAMILY HSP40/DnaJ peptide-binding domain 171 254 IPR008971 GO:0006457|GO:0051082
Sebi622g00016 352 SUPERFAMILY Chaperone J-domain 3 128 IPR036869 -
Sebi622g00016 352 Pfam DnaJ domain 4 67 IPR001623 -
Sebi622g00016 352 CDD DnaJ 4 59 IPR001623 -
Sebi622g00016 352 PRINTS DnaJ domain signature 42 62 IPR001623 -
Sebi622g00016 352 PRINTS DnaJ domain signature 62 81 IPR001623 -
Sebi622g00016 352 PRINTS DnaJ domain signature 24 39 IPR001623 -
Sebi622g00016 352 PRINTS DnaJ domain signature 6 24 IPR001623 -
Sebi622g00016 352 SUPERFAMILY HSP40/DnaJ peptide-binding domain 257 342 IPR008971 GO:0006457|GO:0051082
Sebi622g00016 352 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Sebi622g00016 352 Gene3D DnaJ domain 3 155 IPR036869 -
Sebi622g00016 352 Gene3D - 254 333 - -
Sebi622g00016 352 SMART dnaj_3 3 62 IPR001623 -
Sebi622g00016 352 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Sebi622g00016 352 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 348 - -
Sebi622g00016 352 FunFam Dnaj homolog subfamily b member 167 252 - -
Sebi622g00016 352 FunFam DnaJ subfamily B member 13 254 334 - -
Sebi622g00016 352 FunFam DnaJ subfamily B member 13 3 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi622g00016 Sebi-Chr622 496432 498202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi622g00016 5 69 C2H2 Transcription Factor Family AT1G74250 40.580 2.56e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi622g00016 K09510 - gmx:100778672 520.39