Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi622g00010 ATGGCTTCCCGTTATGATTTAATCTGTAATGTGAATGGAGGCTCTGAGCATAAGATATGGAGAATTAAAGTCAGAGTCATTAGGCTATGGAGGTCTTCATATTTTAAGGATAACAATAATAAACCAATGATTGAATTGGTTGTTTTGGACGAACAGGGAGGTCGTATCCAATGCACGGTGAAGAGCATTCATGTGTATCTGTTTGAGAATAGTATCAACGAAGGTAATGTGTACATGCTAGAAAACCTCAGCGTTGCACTTAACAGTGGAAAGTACAAACCTACAATGCATGAATTTAGAATGTTCTTCAAGAGAGAGACACGAGTTACTCTGGTAGAAGATTCTTCCATTCCCCTCTATGGTTTTTCATTTGTCCCATTCGTTGAAATATTGAATGAAACTAAGGACGACAGACGTTTGGTTGATGTACTAGGTGTTGTTACTGGGAAAGGTAATCTGATTGAGTTCAAGAAAGAGGGAAAGCCATGCAACTATGTTGTCATAGAGTTGGAAAATATTGAGGGAGGTCTTAAACTTAGGTGGTCAGTAGGTGTTTCAAACACAACTTACAACTCTAAGTTGTTTATCAATGCCAATATTCCTGAAATTGAAGACTTTCAAATGAGGTTGAAATCTTCTGATTCTCAACAAGGTATTCAGTTTAGTCAGTTAAGTGATCATGCTTCTTTGACCCTTGAGGAAGAATTTCTTGAAAGAGGAGTGTACAAATCAATTGCTGATTTGAAAGAAGTAACACGGGACATTGAGTCTGAATATAACTGGTGCTATCGTGCCTGTAAGAAATGTTCTCTTGGTTTGAAGTTGGATGGGTCTATGTTCTATTGTAAAAAATGTGTCACTCATTATTCAACTTTTGTGACAAGATATTCTATTCAGCTTCGTGTAGTGGATGAGACAGATTCTGCATCTTTTATCTTATTTGATAAAGAAGCCTCAAATTTTCTGAAAATTCCTGCATATAAACTTCGCACTTCATATATTGCCAAGGGTGGAGATAAGAATAGGCATCCCGAAGAGATTGATTCCTTTAAAGATAAGAAATTCCTTTTTAAAGTGCAAGTTAAGATTCAAGATATGGAGTCAATTGTTCCTTATGTCATTAGTATTTCAAGGCTTTGTTTTGAAGATAACATTATAGCTTCCTTTGAAAAGAAATACCAAATTGAAGAGGTAGCATTAATTCAAGACAACTCTGAACTTTTGAGTCAGTTTACTGAGTCCTCAGATCTGTTGAAGGACAATTTATCTGTGTCATGTGATAATGGAGTAGATACTCCAAGTCCCCTTTTACCGACTGGAAAAACGACATCGAATATGGATTCAAGTGTTATAAAGGTTCTTGATGTGGATCTTGCTGAGTATTGTGGAAATGCAAGTTTTGATACTCCCTCAAAATGCAAGGGTGAGATGCATTCTGAACAGACCATAGTTCGCGTTGCTGTTCATGGTGATGAACAATCTGCTAAGAAGCCGAGGAAAGTTATCAAGGAAGAGAAGAATTAG 1524 0.3675 MASRYDLICNVNGGSEHKIWRIKVRVIRLWRSSYFKDNNNKPMIELVVLDEQGGRIQCTVKSIHVYLFENSINEGNVYMLENLSVALNSGKYKPTMHEFRMFFKRETRVTLVEDSSIPLYGFSFVPFVEILNETKDDRRLVDVLGVVTGKGNLIEFKKEGKPCNYVVIELENIEGGLKLRWSVGVSNTTYNSKLFINANIPEIEDFQMRLKSSDSQQGIQFSQLSDHASLTLEEEFLERGVYKSIADLKEVTRDIESEYNWCYRACKKCSLGLKLDGSMFYCKKCVTHYSTFVTRYSIQLRVVDETDSASFILFDKEASNFLKIPAYKLRTSYIAKGGDKNRHPEEIDSFKDKKFLFKVQVKIQDMESIVPYVISISRLCFEDNIIASFEKKYQIEEVALIQDNSELLSQFTESSDLLKDNLSVSCDNGVDTPSPLLPTGKTTSNMDSSVIKVLDVDLAEYCGNASFDTPSKCKGEMHSEQTIVRVAVHGDEQSAKKPRKVIKEEKN 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi622g00010 507 Pfam Domain of unknown function DUF223 45 136 IPR003871 -
Sebi622g00010 507 Coils Coil 500 507 - -
Sebi622g00010 507 SUPERFAMILY Nucleic acid-binding proteins 16 115 IPR012340 -
Sebi622g00010 507 CDD RPA1_DBD_A_like 21 109 - -
Sebi622g00010 507 Gene3D - 8 115 IPR012340 -
Sebi622g00010 507 Gene3D - 116 181 IPR012340 -
Sebi622g00010 507 Gene3D - 231 389 IPR012340 -
Sebi622g00010 507 PANTHER OS03G0429900 PROTEIN 190 380 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi622g00010 507 SUPERFAMILY Nucleic acid-binding proteins 254 369 IPR012340 -
Sebi622g00010 507 Pfam Replication factor-A C terminal domain 253 364 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi622g00010 Sebi-Chr622 248091 250670 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi622g00010 20 329 Core DNA Replication Machinery Family AT2G06510 23.280 4.21e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi622g00010 - - adu:107477146 382.104