Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi620g00031 ATGATGGAACAAACTGAAACTAACAATATTGTTGTGGTTGATCCCAAAAATTCTAAATCCCCCAATAAAGATAATTTGGATTCTCATCAGATTCCTGAAGGTTACAAAAGAATAAGTGAATTAACAGATGAGGATATCAGAGGGCCTGAGTTTGATACAGAAGAGGATGCATATGATTTCTACTATGAGTATGCTAAATTCATAGGATTTTCTGTTAGGAAAGGTGATGTCTATAGAAATTGTAATGGTTCAATTACAATGAGGCAATTGGTTTGTAATAGAGAGGGAGAGAGAAGTGAGAAGCATCTTAATAGGACTGATAGAATTAGGGAGGCAAAGGCCTTGACCCGAACTAAGTGTAATGTAAGGCTCCGTATTTCCTTAGATTATAGAAGTAGAAAGTGGAGGGTTGGAATCTTTGAGCCAACTCACAACCATGAATTGACTCTTGCAAGTATGATACATTTGCTACTTGCTTATCGTGGGTTGAGTGTAGCTGATAAGGCACAGGTTGACGGCCTACATCATTATGGTGTTAGGACTTGTCATATAATGGATCTTATAATGGGTCAAAAGACCCTAATTTATGGAAATTTTAGTCGTCGGAAGTTTGAGGATGAGTGGAGCAAGGTTGTTGACAAACATGGTTTGAGGGAAAATAGATATGAAGTTCAAGCTTCAAATGTCTACACGAGGAATAAGTTTTTTGATGTTCGAAAGCAAATTGAGAAAGTTGTTGCCATAAATGTGATTGAGAGGACAAATGTTGGTAATGTTGTTACAATGAAGATGAATAAATTTGGAACTCCTGATTCTACTTATATTGTTATGTTGGATAAGTCTAATGGTAATTTGGTTTGTGATTGTCGCAAGTTTGAATCATGTGGCATCCCATGTTCACACATTTTCAGTGCAATGAAGCATGAGCAAGTGGAATCCATTCCTGCATCTTTGATTTCCAAAAGGTGGACGAAGTTGGCTAAAGTTGAGCACATTTCTTTTGTTTATGCTGAAGAAGGTGACACATCAAAGAAAGACTTATTGAGGTCTGGTGTTGTTGGTGCTGCATGTAACAGGCTTAACAAGGCTTCCCGTAGAAATCCTCACAATTTTTTAAAAAACATTGAATCTATTCACAAGTTAGCAAAACAGATGGAAAGGCAGGAAGGTATTGACTTGAACATTACTGATATATCAAGAGTTGTCCGTGACCGAACTGTTGTTAAAACTAAAGGTGCCCATCGAAAGAATAAGAAAAGACAAAAAAAAGGAAATGTTCTTATTGTAAACGTCCAGGCCACACAGTTAGGGCATGCACTAAATATGCTACTCGTGATCAATTGGATACAGTTCTTGAAGAAGAATCATCTGTTGAGACTGATGAATTCAAGAGATGAAAGTAGGTCACGAGATGATCATTTTTCTAACCATTTGAATGATGTAACAGTCTCTGCTGGTCAGAATTGTGCTTCAGACAAGGGTCAGTCTAAGAAGAAAAGGAAAAATAGTGAAAGACTGAAATTGACACAAGAATCAGTTAATGAAAGGAGGTCCAATGATGTGAACAAAGCTCAATAG 1578 0.3701 MMEQTETNNIVVVDPKNSKSPNKDNLDSHQIPEGYKRISELTDEDIRGPEFDTEEDAYDFYYEYAKFIGFSVRKGDVYRNCNGSITMRQLVCNREGERSEKHLNRTDRIREAKALTRTKCNVRLRISLDYRSRKWRVGIFEPTHNHELTLASMIHLLLAYRGLSVADKAQVDGLHHYGVRTCHIMDLIMGQKTLIYGNFSRRKFEDEWSKVVDKHGLRENRYEVQASNVYTRNKFFDVRKQIEKVVAINVIERTNVGNVVTMKMNKFGTPDSTYIVMLDKSNGNLVCDCRKFESCGIPCSHIFSAMKHEQVESIPASLISKRWTKLAKVEHISFVYAEEGDTSKKDLLRSGVVGAACNRLNKASRRNPHNFLKNIESIHKLAKQMERQEGIDLNITDISRVVRDRTVVKTKGAHRKNKKRQKKGNVLIVNVQATQLGHALNMLLVINWIQFLKKNHLLRLMNSRDESRSRDDHFSNHLNDVTVSAGQNCASDKGQSKKKRKNSERLKLTQESVNERRSNDVNKAQ 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi620g00031 525 MobiDBLite consensus disorder prediction 467 525 - -
Sebi620g00031 525 Pfam FAR1 DNA-binding domain 59 149 IPR004330 -
Sebi620g00031 525 PANTHER OS01G0519700 PROTEIN 45 188 - -
Sebi620g00031 525 MobiDBLite consensus disorder prediction 1 27 - -
Sebi620g00031 525 ProSiteProfiles Zinc finger SWIM-type profile. 274 310 IPR007527 GO:0008270
Sebi620g00031 525 SMART 26again6 285 312 IPR006564 GO:0008270
Sebi620g00031 525 MobiDBLite consensus disorder prediction 1 34 - -
Sebi620g00031 525 MobiDBLite consensus disorder prediction 478 492 - -
Sebi620g00031 525 MobiDBLite consensus disorder prediction 493 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi620g00031 Sebi-Chr620 589205 591887 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi620g00031 FAR1 4.4e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi620g00031 - - ccaj:109792835 170.244