Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi620g00028 ATGAAGCAACACAGCTTCTGCAATTCGTCTTCTTTTTACCCATCTGATCAAATTGCTGCTGAAGCACCTTCCCATCAGGATAAAGCCCTTGCTGCTTTGAAGAATCACAAGGAAGCTGAGAAGAGAAGGAGGGAGCGAATCAACTCCCACCTCGATAAGCTTCGCACTCTTCTTCCTTACCGCTCTGACCTACTCCCTGACCTCATCGAAATCCTAAGGTCTTTGAACCTGAAAACGCTCAAGGCTGAACTGGCAACGCTTGGAGGAAGAACTCGAAACGTTCTTGTGGTGGCTGCGGATAAAGATCACAGCATTGAATCGATTCAGTTTCTTCCAGAACTGTTCAAGTCTTTGCTTGAACGCTCCAATTCTAGTGAGAGATCCAAAAGACGCCGTGTCATGGACCGAAACTTGATGGCTTGA 423 0.4681 MKQHSFCNSSSFYPSDQIAAEAPSHQDKALAALKNHKEAEKRRRERINSHLDKLRTLLPYRSDLLPDLIEILRSLNLKTLKAELATLGGRTRNVLVVAADKDHSIESIQFLPELFKSLLERSNSSERSKRRRVMDRNLMA 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi620g00028 140 Gene3D - 34 135 IPR036638 GO:0046983
Sebi620g00028 140 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 32 73 IPR036638 GO:0046983
Sebi620g00028 140 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 31 111 IPR011598 GO:0046983
Sebi620g00028 140 Pfam Helix-loop-helix DNA-binding domain 35 63 IPR011598 GO:0046983
Sebi620g00028 140 PANTHER TRANSCRIPTION FACTOR BHLH30 60 135 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi620g00028 Sebi-Chr620 536827 538095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi620g00028 12 125 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 41.436 1.59e-25 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi620g00028 HLH 7.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi620g00028 - - pop:7495692 114.39